Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0719
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)                      29   3.3  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         29   4.4  
SB_41687| Best HMM Match : SAP (HMM E-Value=3.3e-08)                   29   5.8  
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_3626| Best HMM Match : RelB (HMM E-Value=0.84)
          Length = 496

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 60  DTSTRLAIIIIKFKFRSESWPSAGCLSSSFWSWHLRVRAWLSTTTVTMQMRISA 221
           D ST  A+++I     S S  +   LS S W W +    WLS   +  ++ I A
Sbjct: 123 DNST--AVVVINHMGTSHS-TALNALSKSIWLWAIERNLWLSAAHLAGKLNIEA 173


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 280 YIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEI 405
           Y     S  +I    + VGV ++   G  ++D  QHY K+E+
Sbjct: 519 YARSVTSTLKISSAETHVGVTVYATQGKNVVDLKQHYNKTEL 560


>SB_41687| Best HMM Match : SAP (HMM E-Value=3.3e-08)
          Length = 606

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -3

Query: 301 VKESALCSPRPHQ--RICEVPDKGTGDEHADIRICIVTVVVESHARTRKCQLQ 149
           V  SAL +PRP Q   I   P+  +  EHA  R  +V++  +S    +K QLQ
Sbjct: 44  VPVSALPAPRPAQVIEIDSTPESKSTQEHAQERPQLVSLDKKSLNSLKKTQLQ 96


>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 317  SSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWPXXXXXXXXXXXXXRNEEAK 496
            S +R  VL C S+ V  LL+ S ++V +     +W R   P             RN++ +
Sbjct: 972  SPLRVLVLSCFSVVVAFLLSPSRVLVLSCFSQASWTRRPSPRGRLHSPIQARPNRNDQER 1031

Query: 497  L 499
            +
Sbjct: 1032 I 1032


>SB_53400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 304 CVKESALCSPRPHQRICEVPDKGTGDE 224
           C K    C PRPH+ I E P KGT  E
Sbjct: 919 CQKSCNACPPRPHKLIPEKP-KGTCSE 944


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,982,960
Number of Sequences: 59808
Number of extensions: 509588
Number of successful extensions: 1243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)