Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0717
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 105 7e-24
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 3.7
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 6.5
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 25 6.5
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 6.5
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 6.5
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 8.6
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 8.6
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 8.6
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 8.6
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 105 bits (251), Expect = 7e-24
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = +3
Query: 255 KHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKRIRVKLD 434
+HV+F+ R+ILPKP K+RV QKRPRSRTLT+V+NAILED+VFP EI+GKR R D
Sbjct: 90 RHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATD 147
Query: 435 GSQLIKVHLDKNQQTTIEHKVDTF 506
G + IKV LD T+++K+ +F
Sbjct: 148 GRKTIKVFLDNRDANTVDYKLGSF 171
Score = 77.4 bits (182), Expect = 2e-15
Identities = 39/83 (46%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Frame = +1
Query: 10 KIIKASSAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 183
KI+K SS++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 184 MPKLNAFQKIQIRLVRELEKKFS 252
P L AF K Q RL RELEKKF+
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFA 88
Score = 33.5 bits (73), Expect = 0.025
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = +2
Query: 497 GHLPSVYKKLTGREVTFEFP 556
G SVY KLTG+ VTFEFP
Sbjct: 169 GSFSSVYHKLTGKNVTFEFP 188
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 329 KEATLKDIDLCVQCYPRGLGLPC 397
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 429 LDGSQL-IKVHLDKNQQTTIEHKVDTFHLYTRS 524
L GSQ+ K D +Q ++EH V+T H TRS
Sbjct: 114 LSGSQIKTKASTDGSQFISVEHFVETIH-QTRS 145
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 204 SEDPDQACP*ARKEVQWKHVVF 269
+EDP ++ P A K+V W+ +F
Sbjct: 297 AEDPQKSLPRATKQVFWRIAIF 318
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 172 IYVPMPKLNAFQKIQIRLVRELEKKFSGNM 261
+++P K F+KI+ +VRE E+K N+
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEKTGKNV 130
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 291 PKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKR 416
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 347 P*AWPLLFVSNTSFVAGLRQDLTVSN 270
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 438 SQLIKVHLDKNQQTTIEHKVDTFHLYTRS*RDA-K*PSSSPNLICKPS 578
+ L + L+++QQ + ++D+F + ++ R+ + SS+PN+ K S
Sbjct: 95 NSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESSSNPNISRKQS 142
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +3
Query: 345 RTLTSVYNAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF 506
++L + Y+ + EDL ++ +GK+ ++ ++L VHL + TIE + F
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKF 615
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 478 VCWFLSKCTLMSCEPSNLTLMR 413
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,977
Number of Sequences: 5004
Number of extensions: 48329
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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