Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0717
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 88 6e-18
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 86 2e-17
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 42 5e-04
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 1.6
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 2.9
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 2.9
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 5.0
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 5.0
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 27 8.7
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 87.8 bits (208), Expect = 6e-18
Identities = 43/89 (48%), Positives = 64/89 (71%)
Frame = +3
Query: 240 KEVQWKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKRI 419
K+ K VV V R+I+ P + V +RPR+RTLT+V++ ILED+V+PAEIVGKRI
Sbjct: 86 KKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRI 141
Query: 420 RVKLDGSQLIKVHLDKNQQTTIEHKVDTF 506
R +LDG+++IK+ LD ++ E+K++TF
Sbjct: 142 RYRLDGAKVIKIFLDPKERNNTEYKLETF 170
Score = 80.6 bits (190), Expect = 9e-16
Identities = 43/99 (43%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Frame = +1
Query: 10 KIIKASSAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 183
KI K E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 184 MPKLNAFQKIQIRLVRELEKKFSGNM*SLLETVRSCLSP 300
AF+KI +RLVRELEKKFSG ++ T R P
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPP 105
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 85.8 bits (203), Expect = 2e-17
Identities = 42/89 (47%), Positives = 61/89 (68%)
Frame = +3
Query: 240 KEVQWKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKRI 419
K+ K VV V R+I+ P + V RPR+RTLT+V++ ILED+V+PAEIVGKR+
Sbjct: 99 KKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRV 154
Query: 420 RVKLDGSQLIKVHLDKNQQTTIEHKVDTF 506
R LDG +++K+ LD ++ E+K+DTF
Sbjct: 155 RYHLDGRKIMKIFLDPKERNNTEYKLDTF 183
Score = 69.3 bits (162), Expect = 2e-12
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Frame = +1
Query: 64 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLNAFQKIQIRLVREL 237
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP A++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 238 EKKFSGNM*SLLETVRSCLSP 300
EKKFSG L+ T R P
Sbjct: 98 EKKFSGKDVVLVATRRIVRPP 118
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/64 (35%), Positives = 36/64 (56%)
Frame = +1
Query: 118 LYITKAKEIELHNKKSIIIYVPMPKLNAFQKIQIRLVRELEKKFSGNM*SLLETVRSCLS 297
+Y+ ++ N K ++I+V AF+KI +RLV+ELEKKFSG + + R +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKD-VVFDATRRIVR 88
Query: 298 PATK 309
P K
Sbjct: 89 PLNK 92
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +3
Query: 240 KEVQWKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVG 410
K+ K VVF R+I+ +P +K + PR+RTL +V++ ILED+V ++G
Sbjct: 71 KKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 387 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 494
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +1
Query: 70 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLNAF 204
LVE+ D ++ + Y+ + L++K +++Y+ K++ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +1
Query: 70 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLNAF 204
LVE+ D ++ + Y+ + L +K ++IY+ K++ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 70 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLNAF 204
LVE+ D ++ + Y+ + L +K +++Y+ K++ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +1
Query: 16 IKASSAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 195
++ S E +SF S+ + + + D L + Y KEI N+ ++ + + +L
Sbjct: 535 LEQSRKEIESFHLSLQDEMAKRKQAEDALCSLEKQYAQSQKEI---NRLTLDMEMANDRL 591
Query: 196 NAFQKIQIRL---VRELEKK 246
N F +++ L V EL+K+
Sbjct: 592 NDFNLVRLNLENTVCELKKE 611
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 336 PRSRTLTSVYNAILEDLVFPAEIVGKRIRVKLDGSQLIK 452
P +RTLT+ ++ IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,890
Number of Sequences: 37544
Number of extensions: 319071
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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