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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0717
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)              117   9e-27
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)                28   5.1  
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)           28   6.7  
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           27   8.9  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        27   8.9  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score =  117 bits (281), Expect = 9e-27
 Identities = 56/84 (66%), Positives = 69/84 (82%)
 Frame = +1

Query: 4   STKIIKASSAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 183
           S KI+K     A+ FE  ISQA++ELE NSD+KAQLRELYI+ AKEI++  KK+III+VP
Sbjct: 8   SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67

Query: 184 MPKLNAFQKIQIRLVRELEKKFSG 255
           +P++ AFQKIQ RLVRELEKKFSG
Sbjct: 68  VPQIRAFQKIQTRLVRELEKKFSG 91



 Score = 41.9 bits (94), Expect(2) = 1e-08
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +3

Query: 240 KEVQWKHVVFVGDRKILPKPSHKTRVANKQKRPRS 344
           K+   KHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 87  KKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 34.7 bits (76), Expect(2) = 1e-08
 Identities = 13/17 (76%), Positives = 16/17 (94%)
 Frame = +3

Query: 456 HLDKNQQTTIEHKVDTF 506
           HLDK QQTTI+HK++TF
Sbjct: 121 HLDKTQQTTIDHKLETF 137



 Score = 31.9 bits (69), Expect = 0.41
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 509 SVYKKLTGREVTFEFP 556
           +VYKKLTG++V FEFP
Sbjct: 139 TVYKKLTGKDVVFEFP 154


>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 1831

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 92   PTSKPNFGSFTLQKLKKLNYTIRS 163
            P S  N+G FT+++LK  +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438


>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
          Length = 151

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/26 (42%), Positives = 22/26 (84%)
 Frame = +1

Query: 178 VPMPKLNAFQKIQIRLVRELEKKFSG 255
           VP+P+++A QK++ +L R++E+K +G
Sbjct: 69  VPLPQVSAMQKVKGKL-RDMEQKLNG 93


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
 Frame = +2

Query: 71  WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 169
           WS+ KPTP  KPN        FG   T Q L+K N+ +  RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 481 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 374
           V+CW L + + +  EP N  L +L ++  GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +1

Query: 82   ETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYVPMPKLNAFQKIQIRLVRELEKK 246
            E N+ LK +L E    L +T+ +E E+ N K + +YV M KL + Q        ELEK+
Sbjct: 1699 EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYVNMSKLESTQGTLEEKNAELEKE 1756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,098,793
Number of Sequences: 59808
Number of extensions: 364125
Number of successful extensions: 935
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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