BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0717 (607 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 117 9e-27 SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 5.1 SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 28 6.7 SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 27 8.9 SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9 SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 27 8.9 >SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) Length = 157 Score = 117 bits (281), Expect = 9e-27 Identities = 56/84 (66%), Positives = 69/84 (82%) Frame = +1 Query: 4 STKIIKASSAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 183 S KI+K A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP Sbjct: 8 SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67 Query: 184 MPKLNAFQKIQIRLVRELEKKFSG 255 +P++ AFQKIQ RLVRELEKKFSG Sbjct: 68 VPQIRAFQKIQTRLVRELEKKFSG 91 Score = 41.9 bits (94), Expect(2) = 1e-08 Identities = 20/35 (57%), Positives = 25/35 (71%) Frame = +3 Query: 240 KEVQWKHVVFVGDRKILPKPSHKTRVANKQKRPRS 344 K+ KHVV V R+ILP+P+ K+R KQKRPRS Sbjct: 87 KKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120 Score = 34.7 bits (76), Expect(2) = 1e-08 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = +3 Query: 456 HLDKNQQTTIEHKVDTF 506 HLDK QQTTI+HK++TF Sbjct: 121 HLDKTQQTTIDHKLETF 137 Score = 31.9 bits (69), Expect = 0.41 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = +2 Query: 509 SVYKKLTGREVTFEFP 556 +VYKKLTG++V FEFP Sbjct: 139 TVYKKLTGKDVVFEFP 154 >SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) Length = 1831 Score = 28.3 bits (60), Expect = 5.1 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = +2 Query: 92 PTSKPNFGSFTLQKLKKLNYTIRS 163 P S N+G FT+++LK +YT +S Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438 >SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) Length = 151 Score = 27.9 bits (59), Expect = 6.7 Identities = 11/26 (42%), Positives = 22/26 (84%) Frame = +1 Query: 178 VPMPKLNAFQKIQIRLVRELEKKFSG 255 VP+P+++A QK++ +L R++E+K +G Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93 >SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) Length = 417 Score = 27.5 bits (58), Expect = 8.9 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%) Frame = +2 Query: 71 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 169 WS+ KPTP KPN FG T Q L+K N+ + RS Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166 >SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 932 Score = 27.5 bits (58), Expect = 8.9 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 481 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 374 V+CW L + + + EP N L +L ++ GK K S+ Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373 >SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) Length = 3107 Score = 27.5 bits (58), Expect = 8.9 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Frame = +1 Query: 82 ETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYVPMPKLNAFQKIQIRLVRELEKK 246 E N+ LK +L E L +T+ +E E+ N K + +YV M KL + Q ELEK+ Sbjct: 1699 EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYVNMSKLESTQGTLEEKNAELEKE 1756 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,098,793 Number of Sequences: 59808 Number of extensions: 364125 Number of successful extensions: 935 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 871 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 932 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1475788250 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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