Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0717
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   103   7e-23
U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    28   4.5  
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  103 bits (248), Expect = 7e-23
 Identities = 47/90 (52%), Positives = 68/90 (75%), Gaps = 1/90 (1%)
 Frame = +3

Query: 240 KEVQWKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYNAILEDLVFPAEIVGKR 416
           K+   + ++ +  R+ILPKP   ++    KQKRPRSRTLT+V++A L++LV+PAE+VG+R
Sbjct: 84  KKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRR 143

Query: 417 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTF 506
           IRVKLDG ++ KVHLDK+ QT + HK+  F
Sbjct: 144 IRVKLDGKKVYKVHLDKSHQTNVGHKIGVF 173



 Score =   99 bits (238), Expect = 1e-21
 Identities = 46/82 (56%), Positives = 60/82 (73%)
 Frame = +1

Query: 10  KIIKASSAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 189
           K++K+        E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 190 KLNAFQKIQIRLVRELEKKFSG 255
           +L AF KI   LVRELEKKF G
Sbjct: 67  QLKAFHKIHPALVRELEKKFGG 88



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +2

Query: 497 GHLPSVYKKLTGREVTFEFPEP 562
           G   SVY+KLTG++VTFEFP+P
Sbjct: 171 GVFASVYRKLTGKDVTFEFPDP 192


>U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical
           protein C42D4.11 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +1

Query: 154 NKKSIIIYVPMPKLNAFQKIQIRLVRELEKKFSGNM*SLLETVRSCLSPATKLVLLTNKR 333
           N   +I    +   N  Q   I+ +  ++K+F GNM   L+TV   L P T+ +    + 
Sbjct: 32  NDTCVIAQANLTTPNECQLCSIQNLMHIQKRFRGNMIIALKTV--SLDPITESMCTPFEL 89

Query: 334 GHAQGH 351
           G   GH
Sbjct: 90  GTINGH 95


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 74  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 184
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 490 CSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIALYTEV 353
           C   +C F+  C ++SC      ++R      GKT+ +R  L+T+V
Sbjct: 334 CQFTICTFIGVCCVISC-----CVLRTGGGGRGKTRPNREYLHTKV 374


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +3

Query: 264 VFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILE---DLVFPAEIVGKRIRVKLD 434
           + V   ++LPK   +  +A KQ+       T+ YN IL+   + V   E     +  ++ 
Sbjct: 253 IHVRGEQVLPKRISENWIAKKQQLISGDQFTAAYNKILDEKNETVKKCEEEKALVMSEIG 312

Query: 435 GSQLIKVHL-DKNQQTTIEHKVDT 503
           G+    V   D+  Q ++  +VDT
Sbjct: 313 GTNYTSVRREDRANQKSLRLRVDT 336


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 96  VGVGFEFDQRLRDRGLEGIRLSTARFDDL 10
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,497,126
Number of Sequences: 27780
Number of extensions: 275395
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)