Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0717
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 86 1e-17
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 85 3e-17
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 85 3e-17
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 83 1e-16
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 83 1e-16
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 29 3.2
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 29 3.2
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 29 3.2
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 28 5.5
At1g69060.1 68414.m07902 expressed protein 27 7.3
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 27 7.3
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 9.6
At2g20810.1 68415.m02448 glycosyl transferase family 8 protein c... 27 9.6
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 86.2 bits (204), Expect = 1e-17
Identities = 43/88 (48%), Positives = 61/88 (69%)
Frame = +3
Query: 240 KEVQWKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKRI 419
K+ K V+FV R+I+ P V +RPR+RTLTSV+ A+LED+ FPAEIVGKR
Sbjct: 86 KKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGKRT 141
Query: 420 RVKLDGSQLIKVHLDKNQQTTIEHKVDT 503
R +LDGS+++KV LD ++ E+K++T
Sbjct: 142 RYRLDGSKIMKVFLDAKEKNNTEYKLET 169
Score = 81.8 bits (193), Expect = 3e-16
Identities = 46/102 (45%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Frame = +1
Query: 10 KIIKASSAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 183
KI K +AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 184 MPKLNAFQKIQIRLVRELEKKFSGNM*SLLETVRSCLSPATK 309
AF+KI RLVRELEKKFSG + T R + P K
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKD-VIFVTTRRIMRPPKK 107
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 512 VYKKLTGREVTFEFP 556
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 85.0 bits (201), Expect = 3e-17
Identities = 43/89 (48%), Positives = 62/89 (69%)
Frame = +3
Query: 240 KEVQWKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKRI 419
K+ K V+ + R+I+ +P K A KRPR+RTLTSV+ AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 420 RVKLDGSQLIKVHLDKNQQTTIEHKVDTF 506
R +LDG++++KV LD ++ E+KV+ F
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYKVEAF 170
Score = 74.5 bits (175), Expect = 5e-14
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = +1
Query: 10 KIIKASSAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 183
KI K E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 184 MPKLNAFQKIQIRLVRELEKKFSGNM*SLLETVRSCLSP 300
A++KI +RLVRELEKKFSG L+ T R P
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPP 105
Score = 31.9 bits (69), Expect = 0.34
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 509 SVYKKLTGREVTFEFP 556
+VYKKLTG++V FEFP
Sbjct: 172 AVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 85.0 bits (201), Expect = 3e-17
Identities = 43/89 (48%), Positives = 62/89 (69%)
Frame = +3
Query: 240 KEVQWKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKRI 419
K+ K V+ + R+I+ +P K A KRPR+RTLTSV+ AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 420 RVKLDGSQLIKVHLDKNQQTTIEHKVDTF 506
R +LDG++++KV LD ++ E+KV+ F
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYKVEAF 170
Score = 74.5 bits (175), Expect = 5e-14
Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Frame = +1
Query: 10 KIIKASSAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 183
KI K E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 184 MPKLNAFQKIQIRLVRELEKKFSGNM*SLLETVRSCLSP 300
A++KI +RLVRELEKKFSG L+ T R P
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPP 105
Score = 31.9 bits (69), Expect = 0.34
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2
Query: 509 SVYKKLTGREVTFEFP 556
+VYKKLTG++V FEFP
Sbjct: 172 AVYKKLTGKDVVFEFP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 83.4 bits (197), Expect = 1e-16
Identities = 41/88 (46%), Positives = 61/88 (69%)
Frame = +3
Query: 240 KEVQWKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKRI 419
K+ K V+FV R+I+ P + V +RPR+RTLTSV+ A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 420 RVKLDGSQLIKVHLDKNQQTTIEHKVDT 503
R +LDG++++KV LD + E+K++T
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYKLET 169
Score = 82.2 bits (194), Expect = 2e-16
Identities = 41/84 (48%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Frame = +1
Query: 10 KIIKASSAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 183
KI K FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 184 MPKLNAFQKIQIRLVRELEKKFSG 255
AF+KI +RLVRELEKKFSG
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSG 90
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 512 VYKKLTGREVTFEFP 556
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 83.4 bits (197), Expect = 1e-16
Identities = 41/88 (46%), Positives = 61/88 (69%)
Frame = +3
Query: 240 KEVQWKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKRI 419
K+ K V+FV R+I+ P + V +RPR+RTLTSV+ A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 420 RVKLDGSQLIKVHLDKNQQTTIEHKVDT 503
R +LDG++++KV LD + E+K++T
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYKLET 169
Score = 82.2 bits (194), Expect = 2e-16
Identities = 41/84 (48%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Frame = +1
Query: 10 KIIKASSAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 183
KI K FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 184 MPKLNAFQKIQIRLVRELEKKFSG 255
AF+KI +RLVRELEKKFSG
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSG 90
Score = 29.1 bits (62), Expect = 2.4
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 512 VYKKLTGREVTFEFP 556
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 323 QTKEATLKDIDLCVQCYPRGLG 388
Q +E++LK CV+CYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 342 SRTLTSVYNAILEDLVFPAEIVGKRIRV-KLDG 437
SR T++ NA++ED V+ +++ K + V KLDG
Sbjct: 65 SRLRTTLMNAVVEDDVYGNQLMSKEVDVTKLDG 97
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 323 QTKEATLKDIDLCVQCYPRGLG 388
Q +E++LK CV+CYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -3
Query: 317 NTSFVAGLRQDLTVSNKDYMFPLNFFSSSRTSLIWIF*KAFSLGIGT*MMIDF 159
+T F G TV D FP FF S + F F+ GIG +DF
Sbjct: 147 DTGFAVGFAISFTVGF-DAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDF 198
>At1g69060.1 68414.m07902 expressed protein
Length = 630
Score = 27.5 bits (58), Expect = 7.3
Identities = 21/74 (28%), Positives = 42/74 (56%)
Frame = +1
Query: 100 KAQLRELYITKAKEIELHNKKSIIIYVPMPKLNAFQKIQIRLVRELEKKFSGNM*SLLET 279
+++ R+L I +A E + K+ + + ++ QK ++ VRE +KK NM ++ E
Sbjct: 485 ESRQRQLQI-QADEAQKQRKRRKLENMRKLEMERRQKERVEEVRETQKKDEENM-NMKEK 542
Query: 280 VRSCLSPATKLVLL 321
VR+ ++ + KL+ L
Sbjct: 543 VRAEITKSLKLLEL 556
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 442 CEPSNLTLMRLPTISAGKTKSSRIALYTEVNVLE 341
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 77 NSKPTPTSKPNFGSF 121
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At2g20810.1 68415.m02448 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 536
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 423 VKLDGSQLIKVHLDKNQQTTIEHKVDTFHLY 515
V+ D S L + L+KN +E ++TFH Y
Sbjct: 368 VQKDLSSLFSIDLNKNVNGAVETCMETFHRY 398
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,775,214
Number of Sequences: 28952
Number of extensions: 258319
Number of successful extensions: 700
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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