Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0716
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    28   1.7  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   3.9  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   5.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   9.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.1  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   9.1  

>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 98  ILEVTQILYSNIQKLLPTQESRDLAEAIHSYVQK 199
           I+E+T +++S+  KL   +ESRD    + S++++
Sbjct: 31  IVEITDLVFSSESKLTQRKESRDSKTFVPSFLEE 64


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 165 SLLSCVGNSFWILLYSIWVTSRIFSGTTRV 76
           S L+CV   +W L  +IW + ++ SG+ RV
Sbjct: 55  SNLTCVNIGYWQLFLNIWKSDKL-SGSFRV 83


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/56 (26%), Positives = 34/56 (60%)
 Frame = +1

Query: 457 LRAYRPRSINPLDEVPSSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSIETS 624
           L +  P +++    +PS S+ +  +V+TSS +++++S    TV +   TT+++ +S
Sbjct: 136 LTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSLSSS-GFSTVLSSTNTTSALPSS 190


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +1

Query: 274 SLVQFLRTQLNEFGIINTTPDF----ANFFAAPSSIKSAPSLAGEATWSFFKQL 423
           SLV++LR +L +  + + +PDF      F    S+     S   +  WSF + +
Sbjct: 582 SLVRYLRFELMKTSLASLSPDFDCIGLQFVVGVSASSHLASQWKDEVWSFTRSI 635


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 28/96 (29%), Positives = 44/96 (45%)
 Frame = +1

Query: 229 EGAACGLSELITAVTSLVQFLRTQLNEFGIINTTPDFANFFAAPSSIKSAPSLAGEATWS 408
           + + C LSEL T VTSL+    +  +EF   N  P  + FF +   + S P L G  +  
Sbjct: 174 KNSECSLSELQTIVTSLLAEHPSLAHEFH--NFLPS-SIFFGSKPPLGSFP-LRGIQSSQ 229

Query: 409 FFKQLYSGDFPDILALLRAYRPRSINPLDEVPSSSA 516
           F          +I  LL   RP +++P   + + S+
Sbjct: 230 F-------TLSNISDLLSQSRPDNLSPFSHLSNESS 258


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 247 LSELITAVTSLVQFLRTQLNEFGIINTTPDFANFFAAPSSI 369
           LS+ I++V  ++       N  G   T P+   FF  PSSI
Sbjct: 308 LSQKISSVLEVLSNNNNSNNNNGNNGTVPNAKTFFTPPSSI 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,345
Number of Sequences: 5004
Number of extensions: 61926
Number of successful extensions: 224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)