Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0716
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159... 37 0.015
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 30 2.3
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 30 2.3
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 30 2.3
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 29 5.4
12_02_0735 - 22636835-22639502,22639755-22640734 28 9.5
11_06_0470 + 23977394-23977503,23977755-23977922,23978724-239793... 28 9.5
05_01_0078 - 523366-525196,525622-525675,527135-529341 28 9.5
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 28 9.5
>02_05_0167 -
26415319-26415494,26415591-26415840,26415909-26415974,
26416457-26416600,26416813-26416868,26416966-26417101,
26417190-26417277,26417379-26417482,26418515-26419180,
26419337-26419432,26419974-26420242,26420334-26420489,
26421153-26421192
Length = 748
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -1
Query: 447 DVREITGVQLFEEAPRCLSSKRRSGLN*AWGSEEVRKVGRRVDNAKFVQLSP 292
DV ++GV L EE + LS+ + +W SEE RK+ + D F+Q P
Sbjct: 463 DVTAVSGVNLREEEEQLLSAPKEE----SWASEEARKIAQEEDGKLFLQKGP 510
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 439 PDILALLRAYRPRSINP-LDEVPSSSALLL*TVNTSSRSTVATSPSQETVATYW 597
P L R+ R S +P L PSSSA + +TSSR V SP + A W
Sbjct: 24 PAALGTPRSRRRHSPSPSLALTPSSSASASASASTSSRPKVRPSPRRAYAAAQW 77
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 347 SSLPQAQLSPLRLLLERQRGASSNSCTPVISLTSWPFSEPTD 472
S LP A LSP+R R S P I+ T WP S ++
Sbjct: 24 SPLPAAALSPVRPSARRSPAVSRPDPAPSIARTIWPSSSSSN 65
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 539 HLHVRRSPPHLPRKLSLRIGARPRR*KLHAANPTSKR 649
H H +PPHL R+ + A P R LH PT R
Sbjct: 20 HRHHPAAPPHLLRQRRGSVAATPLRLGLHLPTPTPLR 56
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 352 AAPSSIKSAPSLAGEATWSFFKQLYSGDFPDILAL 456
A PSS+ S+ ++AG+ TW+ + +++ IL L
Sbjct: 32 APPSSVHSSYAVAGDLTWAILETIHAAIGHQILTL 66
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 326 RRPTLRTSSLPQAQLSPLRLLL 391
RRP R +S+ QA LSP RLL+
Sbjct: 309 RRPLTRKTSVSQAILSPYRLLI 330
>11_06_0470 +
23977394-23977503,23977755-23977922,23978724-23979367,
23979584-23979823,23980175-23980296,23980397-23981080
Length = 655
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 213 RNAMMRRSCVWSIRVDHS-CYISRPVLEDSAERIWHYQ 323
RNA+ R +W + + H YI++ + +D ++H Q
Sbjct: 63 RNALENRRAIWRVLLTHPYAYINKEISKDFEYTLFHLQ 100
>05_01_0078 - 523366-525196,525622-525675,527135-529341
Length = 1363
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 258 DHSCYISRPVLEDSAERIWHYQHDARL 338
D CYISR ++ED ER+ +Q +A L
Sbjct: 93 DALCYISRVLMEDVDERVDLHQGEAAL 119
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 528 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDR 617
NGQH+ +D R F G RY H H+ R
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGR 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,128,976
Number of Sequences: 37544
Number of extensions: 413167
Number of successful extensions: 1161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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