Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0715
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    50   3e-07
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    27   2.6  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   4.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   5.9  
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    26   5.9  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    26   5.9  

>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +3

Query: 93  SVEDLHKFLDSFDHVLSDCDGVIWT-QDSLPRVGEFFKQMKKRGKTVNFVSNNS 251
           S ++  +F+D FD  L DCDGV+W+    +P V +  K ++  GK + FVSNNS
Sbjct: 7   SPKEYKEFIDKFDVFLFDCDGVLWSGSKPIPGVTDTMKLLRSLGKQIIFVSNNS 60


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 183 RVGEFFKQMKKRGKTVNFVSNNSLDPEQIMKLNSKQPASTTALR 314
           RVG+F K M       + V  NS DPE I  + +K     T L+
Sbjct: 298 RVGDFVKVMDNDEIPADIVIINSSDPEGICYIETKNLDGETNLK 341


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 30  QKKSLKVLSIMGIESKHLLDLSVEDL 107
           +K+S +  +  G+E + LLDLS E L
Sbjct: 16  KKRSFRTFAYRGVELEQLLDLSAEQL 41


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 571 YLKRPEVLFINGATDRMVPMKTGL 642
           +LKR  + F+NG  D ++PM  GL
Sbjct: 359 FLKRLALRFLNGERDLVLPMYRGL 382


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 18   YYSIQKKSLKVLSIMGIESKHLL 86
            Y+SI KK  ++L ++G+E+  LL
Sbjct: 1043 YFSIHKKLKQLLELVGVENASLL 1065


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 30  QKKSLKVLSIMGIESKHLLDLSVEDL 107
           +K++ +  +  G+E + LLDLS E L
Sbjct: 17  KKRTFRTFAYRGVELEQLLDLSAEQL 42


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 163 HITPSQSERTWSKES--RNLCKSSTLKSNKCLDSIPIMLNTLRLFF 32
           ++ P  S   WS  +     C  STL S   L  +P  +N  RLFF
Sbjct: 118 NVDPEISNALWSVLTWKNTSCSFSTLMSILALVYVPSWINLPRLFF 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,288
Number of Sequences: 5004
Number of extensions: 52092
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)