Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0715
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448...    46   4e-05
04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039...    44   2e-04
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331...    30   1.5  
07_01_0065 + 466416-467465                                             28   6.1  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   8.1  
02_02_0410 - 9926476-9927288                                           28   8.1  

>09_02_0119 -
           4481522-4481580,4481615-4481718,4483132-4483231,
           4483307-4483404,4483688-4483828,4485736-4485788,
           4486578-4486649,4487730-4487801,4487895-4487987,
           4489040-4489107,4489268-4489358
          Length = 316

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 90  LSVEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFVSNNS 251
           L+ +     +DS D  L DCDGVIW  D L   V E    ++K GK + FV+NNS
Sbjct: 10  LTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNS 64



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 257 SRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTFN--KTVYCVTCTETKRVLEAHGF 430
           SR  Y  +F+A  ++   E +   S A A +LK   F+  K VY V        L   GF
Sbjct: 67  SRRQYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGF 126

Query: 431 KCKEGP 448
           +C  GP
Sbjct: 127 ECLGGP 132


>04_04_0337 -
           24503417-24503523,24503612-24503715,24503828-24503927,
           24504009-24504106,24504403-24504455,24504508-24504588,
           24504668-24504739,24504882-24504953,24505045-24505137,
           24505240-24505307,24505388-24505658
          Length = 372

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +3

Query: 96  VEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFVSNNS 251
           +E+    +DS +  + DCDGVIW  D L   V E    ++ +GK + FV+NNS
Sbjct: 72  LENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNS 124


>02_05_0064 -
           25529630-25531440,25531663-25531673,25533113-25533198,
           25533412-25534259,25535385-25535736
          Length = 1035

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 340 HCDRWNDQALKAVVDAGCFELSFIICSGSRLLLETKFTVFPRFFICLKNSPTRG 179
           HC + +D+ LKAV+  GC  L  ++ +G RL+ +       +  I L++    G
Sbjct: 141 HCRKLSDKGLKAVL-LGCQNLRQLVIAGCRLITDNLLIALSKSCIHLEDLVAAG 193


>07_01_0065 + 466416-467465
          Length = 349

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 75  KHLLDLSVEDLHKFLDSFDHVLSDCDGVIWTQD 173
           K L  +S ED+ +FLD FD++ +D  G +   D
Sbjct: 302 KELGKISQEDISEFLDEFDNLDADHSGTLSPAD 334


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = +3

Query: 66   IESKHLLDLSVEDLHKFLDSFDHVLSDCDGVIWTQDSLPRVGEFFKQMKKRGKT------ 227
            +    L  L+ E  + + D +D+ +       W +D + R+    K+MKKRGKT      
Sbjct: 953  LTKSQLARLTKEQKNAYFDEYDYRVKLLQKKQW-KDEIRRL----KEMKKRGKTDMDAYG 1007

Query: 228  -VNFVSNNSLDP 260
              N    N LDP
Sbjct: 1008 YANIAGENDLDP 1019


>02_02_0410 - 9926476-9927288
          Length = 270

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 30  QKKSLKVLSIMGIESKHLLDLSVEDLHKFLDSFD 131
           ++K LKV+SI G        L++E  HK  +SFD
Sbjct: 185 EEKQLKVVSIFGTGGLGKTTLAMEVYHKIDESFD 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,391,932
Number of Sequences: 37544
Number of extensions: 312095
Number of successful extensions: 779
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)