Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0715
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)                 29   4.7  
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.7  
SB_56020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
          Length = 1033

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 458 ALDLDLPCI*IRELLRLFW 402
           ALD  +P I +R+LLR+FW
Sbjct: 492 ALDKQMPTIRLRQLLRIFW 510


>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 692 FTSTVTRSVKTPVLKPKRPV 633
           FTST TR+VKTP LK K  +
Sbjct: 423 FTSTSTRNVKTPGLKTKTDI 442


>SB_56020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 389 TCTETKRVLEAHGFKCKEGPDLGPEYYGEYIQYLEDDEEIEPSF 520
           T T  K  LE   +   E  DL  +YYG+   +L +++ + P F
Sbjct: 166 TGTSMKLRLETRWWSNYEVLDLVTQYYGDVEPFLRENDHLSPMF 209


>SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 115 NLCKSSTLKSNKCLDSIPIMLNTLRLFFC 29
           N CK S     KC D IPI +   +  FC
Sbjct: 391 NNCKKSCTDCEKCEDKIPICMEFAKRGFC 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,233,288
Number of Sequences: 59808
Number of extensions: 371068
Number of successful extensions: 1073
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)