Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0715
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.90 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.90 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   8.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   8.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 376 CLLCNLY*DQKSLRSSRIQMQGR 444
           CLLC    DQK+L  S ++  G+
Sbjct: 64  CLLCQKAFDQKNLYQSHLRSHGK 86



 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/70 (17%), Positives = 33/70 (47%)
 Frame = +3

Query: 84  LDLSVEDLHKFLDSFDHVLSDCDGVIWTQDSLPRVGEFFKQMKKRGKTVNFVSNNSLDPE 263
           +++S   +    D  +H   + +  + T D+ PR   ++   +++    + +SN + D +
Sbjct: 300 IEISQNSVSTGSDKENHKTEEPNDEVATYDNTPRDFPYYMYSREQYSQSHLISNENRDFQ 359

Query: 264 QIMKLNSKQP 293
               ++ +QP
Sbjct: 360 TTPTVSVEQP 369


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 198 FKQMKKRGKTVNFVSNNSLDPEQIMKLNSKQPAST 302
           FKQ K+  +T+N  +++ LD +++   N++  + T
Sbjct: 159 FKQNKEEEQTINRKNSDYLDNQEVSMENTENKSCT 193


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 25  VYKKKVSKC*A*WVLNLNI 81
           VY+ +V KC   W+L+  I
Sbjct: 123 VYRMQVDKCGRLWILDTGI 141


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 428  FKCKEGPDLGPEYYGEYIQYLEDDEEIEPSFL 523
            +K ++G   GP +YG    YL +  + EP ++
Sbjct: 921  YKTQDG--FGPIHYGVCSNYLREISDGEPLYV 950


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +2

Query: 461 EYYGEYIQY---LEDDEEIEPSFLTATLR*TCRKCTE 562
           +YY  +I     L  D     S +T   +  C+KCTE
Sbjct: 44  QYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKKCTE 80


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 406 KSLRSSRIQMQGRSRSRAGVLWRIHP 483
           K   S +  M+ R R +A   W IHP
Sbjct: 58  KLFGSKKALMKERIRQKAAGHWVIHP 83


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 406 KSLRSSRIQMQGRSRSRAGVLWRIHP 483
           K   S +  M+ R R +A   W IHP
Sbjct: 58  KLFGSKKALMKERIRQKAAGHWVIHP 83


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 406 KSLRSSRIQMQGRSRSRAGVLWRIHP 483
           K   S +  M+ R R +A   W IHP
Sbjct: 58  KLFGSKKALMKERIRQKAAGHWVIHP 83


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +2

Query: 461 EYYGEYIQY---LEDDEEIEPSFLTATLR*TCRKCTE 562
           +YY  +I     L  D     S +T   +  C+KCTE
Sbjct: 44  QYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKKCTE 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,864
Number of Sequences: 438
Number of extensions: 3183
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)