Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0715
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative ...    46   2e-05
At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative ...    46   2e-05
At5g47760.1 68418.m05900 phosphoglycolate phosphatase, putative ...    45   4e-05
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)            31   0.73 
At5g51290.1 68418.m06358 ceramide kinase-related contains weak s...    30   1.7  
At5g09320.1 68418.m01080 vacuolar sorting protein 9 domain-conta...    30   1.7  
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...    29   3.9  
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    29   3.9  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    29   3.9  
At5g11960.1 68418.m01399 expressed protein                             28   5.1  
At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co...    28   5.1  
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r...    28   6.8  
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated...    28   6.8  
At4g32630.1 68417.m04645 hypothetical protein                          27   8.9  
At2g39370.1 68415.m04832 expressed protein                             27   8.9  

>At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 362

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 27  IQKKSLKVLSIMGIESKHLLDLSVEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFK 203
           I  K L++ S   I  + +    +E+  + +DS +  + DCDGVIW  D L   V E   
Sbjct: 47  INHKPLRMTS-SNITPRAMATQQLENADQLIDSVETFIFDCDGVIWKGDKLIEGVPETLD 105

Query: 204 QMKKRGKTVNFVSNNS 251
            ++ +GK + FV+NNS
Sbjct: 106 MLRAKGKRLVFVTNNS 121


>At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 362

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +3

Query: 27  IQKKSLKVLSIMGIESKHLLDLSVEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFK 203
           I  K L++ S   I  + +    +E+  + +DS +  + DCDGVIW  D L   V E   
Sbjct: 47  INHKPLRMTS-SNITPRAMATQQLENADQLIDSVETFIFDCDGVIWKGDKLIEGVPETLD 105

Query: 204 QMKKRGKTVNFVSNNS 251
            ++ +GK + FV+NNS
Sbjct: 106 MLRAKGKRLVFVTNNS 121


>At5g47760.1 68418.m05900 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 301

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 90  LSVEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFVSNNSL 254
           LS  +     DS D  L DCDGVIW  ++L   V +    ++ +GK V FV+NNS+
Sbjct: 6   LSSSNFKSLFDSVDTFLFDCDGVIWKGETLIDGVSQTLDLIRSKGKNVVFVTNNSV 61


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 27  IQKKSLKVLSIMGIESKHLLDLSVEDLHKFLDS 125
           ++K++ K  S  G++   LLD+S+EDL K   S
Sbjct: 11  VKKRTFKKFSFRGVDLDALLDMSIEDLVKHFSS 43


>At5g51290.1 68418.m06358 ceramide kinase-related contains weak
           similarity to ceramide kinases (GI:21624342) [Mus
           musculus]
          Length = 608

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 116 SRFLRPCPLRLRWCYMDSRFFAASRRVL*TDEETRED 226
           S  L PCP + RWC    RF +    V+    E   D
Sbjct: 477 STTLNPCPEKTRWCRTKGRFLSIGAAVMSNRNERAPD 513


>At5g09320.1 68418.m01080 vacuolar sorting protein 9
           domain-containing protein / VPS9 domain-containing
           protein contains similarity to Rab5 GDP/GTP exchange
           factor, Rabex5 [Bos taurus] gi|2558516|emb|CAA04545;
           contains Pfam profile PF02204: Vacuolar sorting protein
           9 (VPS9) domain
          Length = 712

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +2

Query: 461 EYYGEYIQYLEDDEEI 508
           EYYGE ++++E+DEEI
Sbjct: 689 EYYGESLEFIEEDEEI 704


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 27  IQKKSLKVLSIMGIESKHLLDLSVEDLHKFLDS 125
           ++K++ K  S  G++   LLD+S +DL K   S
Sbjct: 12  VKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPS 44


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 27  IQKKSLKVLSIMGIESKHLLDLSVEDLHKFLDS 125
           ++K+  K  S  G++   LLD+S EDL K   S
Sbjct: 11  VKKRIFKKFSFRGVDLDALLDMSTEDLVKHFSS 43


>At1g03080.1 68414.m00282 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1744

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 618 PISRPIYEEDLRSFQVGYGSVHFRQVYLKVAVKND 514
           PI  P+Y +DLR    G  S H   V   +A   D
Sbjct: 134 PIRAPVYPDDLRKGAFGISSSHLSTVKRNIAFMED 168


>At5g11960.1 68418.m01399 expressed protein
          Length = 344

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 281 IELHNLLWIKAVIGNEIYCLPAFLHLFKELSDSRQRILSPYNTIAIGEDMVEGI 120
           I +  LLW+  V+      L A+LH+FK     R++ L  Y  +   E+++ G+
Sbjct: 127 ISVFQLLWLALVVAILFVLLNAWLHIFKR--QRREQELGEYEVV---EEIIYGL 175


>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
           contains Pfam profile PF00566: TBC domain
          Length = 771

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 193 SPTRGKES*VHITPSQSERTWSKESRNLCKSSTLKSNK 80
           SPT G     H+ PS+S++   KE     +   L ++K
Sbjct: 59  SPTNGSSENTHVNPSESDKKKEKELNKGAERKDLNADK 96


>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
           response factor 30 (GI:20145855) {Arabidopsis thaliana}
          Length = 313

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 603 WGD**DGAHENWSFGFKDGSFYRSGYG 683
           WG   DG   NW +G   GS + SG G
Sbjct: 68  WGWSSDGTDTNWGWGSSSGSNHSSGTG 94


>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
           protein, Candida albicans, PIR2:S58135
          Length = 343

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 603 WGD**DGAHENWSFGFKDGSFYRSGYG 683
           WG   DG   NW +G   GS + SG G
Sbjct: 72  WGWSSDGTDTNWGWGSSSGSNHSSGTG 98


>At4g32630.1 68417.m04645 hypothetical protein 
          Length = 531

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 127 KESRNLCKSSTLKSNKCLDSIPIMLNTLRL 38
           K+SR   KS  L SNK + S PI+ +T  L
Sbjct: 212 KDSRGSSKSLDLSSNKDMPSFPIVRHTSEL 241


>At2g39370.1 68415.m04832 expressed protein 
          Length = 328

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 434 CKEGPDLGPE-YYGEYIQYLEDDEEIEPSFLT 526
           C+   +L PE Y+ EY   LE+D+E + S+ T
Sbjct: 123 CQVSKELNPEDYFLEYSDSLEEDDEKKKSWTT 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,695,729
Number of Sequences: 28952
Number of extensions: 267838
Number of successful extensions: 818
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)