Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0714
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 95 5e-21
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 93 2e-20
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 69 3e-13
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 37 0.002
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 32 0.063
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 31 0.11
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 29 0.59
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 0.77
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 27 1.4
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 2.4
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 26 3.1
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 3.1
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 3.1
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 4.1
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 26 4.1
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 7.2
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 25 7.2
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 7.2
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 25 7.2
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 9.5
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer... 25 9.5
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 9.5
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 25 9.5
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 95.5 bits (227), Expect = 5e-21
Identities = 42/85 (49%), Positives = 61/85 (71%)
Frame = +2
Query: 2 MVNEAEKYRNEDDKQKETFQAKNALESYCFSMKFTMEDEKLQEKISDSEKQTILDKCNDT 181
MV+EAEKY+ ED+ + QAKN LESY +S++ +++D L++K+ S+K+ I +T
Sbjct: 516 MVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKET 575
Query: 182 IKWLDSNQLAEKEEYEHKQKELEGI 256
I+WLD N A K+EYE KQKELEG+
Sbjct: 576 IEWLDHNTTAAKDEYEDKQKELEGV 600
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 93.1 bits (221), Expect = 2e-20
Identities = 41/85 (48%), Positives = 61/85 (71%)
Frame = +2
Query: 2 MVNEAEKYRNEDDKQKETFQAKNALESYCFSMKFTMEDEKLQEKISDSEKQTILDKCNDT 181
MV EAEKY+ ED+ + QAKN LESY +S++ +++D L++K+ S+K+T+ +T
Sbjct: 516 MVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKET 575
Query: 182 IKWLDSNQLAEKEEYEHKQKELEGI 256
I+WLDSN A K+E+E KQKELE +
Sbjct: 576 IEWLDSNTTAAKDEFEAKQKELESV 600
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 69.3 bits (162), Expect = 3e-13
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +2
Query: 2 MVNEAEKYRNEDDKQKETFQAKNALESYCFSMKFTM-EDEKLQEKISDSEKQTILDKCND 178
MV EAE++ ED KE +A+N LE+Y +S+K +DE+L K+ +KQ +LD D
Sbjct: 546 MVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVED 605
Query: 179 TIKWLD-SNQLAEKEEYEHKQKELEGI 256
+WL+ + A KEE+E ++++L+ +
Sbjct: 606 VAEWLEIHGEDASKEEFEDQRQKLDAV 632
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.002
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +2
Query: 2 MVNEAEKYRNEDDKQKETFQAKNALESYCFSMKFTME--DEKLQEKISDSEKQTILDKCN 175
MV +AEKYR D +KE + N ES C ++ ++ +KL ++ + + I D
Sbjct: 558 MVADAEKYRASDMARKEAIENGNRAESVCTDIESNLDIHKDKLDQQAVEDLRSKITDLRE 617
Query: 176 DTIKWLDSNQLAEKEEYEHKQKELEGITIR 265
K ++ E+ + K E++ ++++
Sbjct: 618 TVAKVNAGDEGITSEDMKKKIDEIQQLSLK 647
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 31.9 bits (69), Expect = 0.063
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Frame = +2
Query: 110 EDEKLQEKISDSEKQTILDKCND---TIKWLDSNQLAEKEEYEHKQKELEGITIR*LRRC 280
E+ KLQEK+ +E +++L + ND T++ +L E++ Q+ +E T+ LR+
Sbjct: 649 EERKLQEKV--NEHESLLSRTNDILSTLRKERDEKLIPIHEWQQLQERIEHQTLL-LRQR 705
Query: 281 TRVPEE 298
+VPE+
Sbjct: 706 EKVPEQ 711
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 125 QEKISDSEKQTILD-KCNDTIKWLDSNQLAEKEEYEHKQKELE 250
+EKI E++TI D K + + ++ + EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 28.7 bits (61), Expect = 0.59
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +2
Query: 11 EAEKYRNEDDKQKETFQAKNALESYCFSMKFTMEDEKLQEKISDSEKQTILDKCNDTIKW 190
EAEK +D K++ F + E+ KF +++ L EKI +K+ +L + +
Sbjct: 716 EAEKKILDDLKKQYNFASNQLNEAKIEQAKFKRDEQLLVEKIEGIKKRILLKR--REVNS 773
Query: 191 LDSNQLA 211
L+S +L+
Sbjct: 774 LESQELS 780
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 0.77
Identities = 24/80 (30%), Positives = 34/80 (42%)
Frame = +2
Query: 8 NEAEKYRNEDDKQKETFQAKNALESYCFSMKFTMEDEKLQEKISDSEKQTILDKCNDTIK 187
N+ E + DDKQ + KN+LE+ M+ + E K D + LDK D K
Sbjct: 1272 NKRELPEDSDDKQDTASKDKNSLETIDEKMEDASKIEG-DAKTGDDNEMEDLDKMEDLEK 1330
Query: 188 WLDSNQLAEKEEYEHKQKEL 247
+ EK+ Y EL
Sbjct: 1331 ---PDYAEEKDPYITVMSEL 1347
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 27.5 bits (58), Expect = 1.4
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 92 SMKFTME-DEKLQEKISDSEK--QTILDKCNDTIKWLDSNQLAEKE 220
SM+ T + D+K+Q+K + K Q+ L+ + W D+N+L E E
Sbjct: 2 SMRLTFKGDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNELE 47
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 2.4
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 11 EAEKYRNEDDKQKETFQAKNALESYCFSMKFTMEDEKLQEKISDSEKQTILDKC-NDTIK 187
++EK ++ K + KNA ++ M DE+ E S+K+ K +D +
Sbjct: 105 DSEKPVRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSKDDGSE 164
Query: 188 WLDSNQLAEKEEYEHKQKE 244
LD + E+ + K+K+
Sbjct: 165 ALDDGDIESSEKDKKKKKK 183
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 3.1
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = +2
Query: 11 EAEKYRNEDDKQ-KETFQAKNALESYCFSMKFTMED--EKLQEKISDSEKQTILDKCNDT 181
EAE DK ET KNALE Y + + ++D + S+ + +L K D
Sbjct: 561 EAEHQMIATDKLVAETVDRKNALEEYIYDTRAKLDDIYAPFTNEEESSKFKEMLTKAED- 619
Query: 182 IKWL-DSNQLAEKEEYEHKQKEL 247
WL + + K Y K ++L
Sbjct: 620 --WLYEEGEDTTKAVYTAKLEDL 640
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 293 EESPEVCRASRAEHPEPE 346
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 2 MVNEAEKYRNEDDKQKETFQAKNALESYCFSMKFT 106
M+++ RN+ +KQ T KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 4.1
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +2
Query: 92 SMKFTMEDEKLQEKISD-----SEKQTILDKCNDTIKWLDSNQLAEKEEYEHKQKEL--- 247
S KF E L+ ++ + ++ Q +D+C + W +S+ +EE + K+L
Sbjct: 364 SEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQKNIKKLNDA 423
Query: 248 EGITIR*LRRCTRVPEE 298
E + R L+ T++ E
Sbjct: 424 ESLKSRLLQSRTQMQTE 440
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 92 SMKFTMEDEKLQEKISDSEKQTI-LDKCNDTIKWLDSNQLAEKEEYEH 232
S+K MEDEKL EK+++ +I L TI + E YE+
Sbjct: 114 SLKLIMEDEKLIEKVNEHLPPSIRLWDVIRTINSFNPRTYCESRIYEY 161
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 50 ETFQAKNALESYCFSMKFTMEDEKLQEKISDSEKQTILDKCNDTIKWLDSNQLAEKEEY 226
++F A N +E C KFT D EK+ K + +C W E+++Y
Sbjct: 1074 DSFSASN-VEMQCVQAKFTYNDSNAYEKVF---KPMLFHEC-----WAQVKSAVEEKQY 1123
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +2
Query: 182 IKWLDSNQLAEKEEYEHKQKELEGIT 259
IK+L+ N+L E+E+ ++EL+GIT
Sbjct: 466 IKYLE-NELLEREKRTLSKQELDGIT 490
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +2
Query: 287 VPEESPEVCRA--SRAEHPEPEVPPPGLEALAPPSRRS 394
V +SP R SR P E P A PPSRR+
Sbjct: 891 VSRDSPRYSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 116 EKLQEKISDSEKQTILDKCNDTIKWLDSNQLAEK--EEYEHKQKELEGITIR*LRRCTRV 289
++ +E+ S S ++LD N + N + ++ E +HK +++ T+R L RC ++
Sbjct: 404 DRFKERKS-SLVHSLLDAANAIFESCGLNDIMDETLEFLKHKNPQVKTETLRWLNRCLQL 462
Query: 290 PEESP 304
+ P
Sbjct: 463 TDVCP 467
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 9.5
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Frame = +2
Query: 5 VNEAEKYRNEDDKQKETFQAKNALESYCFSMKFTME-------DEKLQEKISDSEKQTIL 163
V E K R+ED+ QKE + E F E ++++ S+ +K +
Sbjct: 463 VEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSEDVKKEPSEEKKLEVS 522
Query: 164 DKCNDTIKWLDSNQLAEKEE-YEHKQKE 244
D+ +S ++ EKE Y K K+
Sbjct: 523 DEAPKAAPLAESKKVEEKEPFYVSKDKK 550
>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 250
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 80 IPMHSWPGRSPFACHP 33
+P W G +PFA HP
Sbjct: 203 LPWGEWCGNTPFAFHP 218
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 332 HPEPEVPPPGLEALAPPSRRSIKPTFHTTLKPTCNNHLVTS 454
H +P +L+PPS R++KP H+ P+ + L S
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKP-IHSLSNPSTASSLEPS 208
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = +2
Query: 59 QAKNA-LESYCFSMKF---TMEDEKLQEKISDSEKQTI 160
QA+ A LESY ++ T+ + K+Q+++SD KQ +
Sbjct: 115 QARKANLESYRAKLEKEYKTLAENKIQQRLSDGTKQLV 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,346
Number of Sequences: 5004
Number of extensions: 35865
Number of successful extensions: 190
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -