Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0713
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.1  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   4.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.1  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    22   6.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.0  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 207 DQPKSDHASHDAYVQHHDPVDLRIATNG 290
           +Q    HA H  + QHH  V+  +A NG
Sbjct: 319 NQNHHHHAGHHIHAQHH-VVNHHVAANG 345


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 494 ACGHHSHTDSEYNITLF 544
           ACG+HS  +S + +  F
Sbjct: 38  ACGYHSPLESNHKLVTF 54


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 232 DAWSDFGWSQLP 197
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 232 DAWSDFGWSQLP 197
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 647 KTHNIAQFFPIQLLNISVGTHLS 715
           + H +   FPI L  ISV T L+
Sbjct: 386 RQHAVTAKFPIYLYRISVETKLN 408


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 140 LGSDATLFNYVAN 102
           +GSD +L+N+ AN
Sbjct: 160 VGSDGSLYNHTAN 172



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +3

Query: 405 SNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTRTRILNTT 533
           +NG+ + R  + V T+++    S  + N+T  A+    +   T
Sbjct: 648 TNGIVINRASKRVSTLSIDNVQSTHVGNYTCLASNSASVTTYT 690


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,389
Number of Sequences: 336
Number of extensions: 3904
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)