BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0713 (756 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 113 2e-26 SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 113 2e-26 SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 8.8 >SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces pombe|chr 3|||Manual Length = 201 Score = 113 bits (273), Expect = 2e-26 Identities = 54/84 (64%), Positives = 61/84 (72%) Frame = -2 Query: 506 GGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYK 327 GGRKRPV KG TYGKP GVN LK R+ + AEE L+SYWV QD++YK Sbjct: 69 GGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYK 128 Query: 326 YFEVILVDPSHKAIRRDPKINWIV 255 +FEVILVDPSHKAIRRDP+INWIV Sbjct: 129 FFEVILVDPSHKAIRRDPRINWIV 152 Score = 95.1 bits (226), Expect = 1e-20 Identities = 41/59 (69%), Positives = 50/59 (84%) Frame = -3 Query: 709 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 533 MGAY+Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQGY Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGY 59 Score = 67.7 bits (158), Expect = 2e-12 Identities = 31/50 (62%), Positives = 37/50 (74%) Frame = -1 Query: 249 VHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100 VHKHRE RGLTS G+ SRG+GKGHR++ + + A WLR NTL LRR R Sbjct: 155 VHKHRESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201 >SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizosaccharomyces pombe|chr 1|||Manual Length = 201 Score = 113 bits (273), Expect = 2e-26 Identities = 54/84 (64%), Positives = 61/84 (72%) Frame = -2 Query: 506 GGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYK 327 GGRKRPV KG TYGKP GVN LK R+ + AEE L+SYWV QD++YK Sbjct: 69 GGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYK 128 Query: 326 YFEVILVDPSHKAIRRDPKINWIV 255 +FEVILVDPSHKAIRRDP+INWIV Sbjct: 129 FFEVILVDPSHKAIRRDPRINWIV 152 Score = 95.1 bits (226), Expect = 1e-20 Identities = 41/59 (69%), Positives = 50/59 (84%) Frame = -3 Query: 709 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 533 MGAY+Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQGY Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGY 59 Score = 69.3 bits (162), Expect = 5e-13 Identities = 32/50 (64%), Positives = 37/50 (74%) Frame = -1 Query: 249 VHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100 VHKHRE RGLTS G+ SRG+GKGHRY+ + + A WLR NTL LRR R Sbjct: 155 VHKHRESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201 >SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr 1|||Manual Length = 537 Score = 25.4 bits (53), Expect = 8.8 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = -3 Query: 736 LLGLPQAAKMGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTR 605 L+G P A K I L +KK+ +V +VWQY L + Sbjct: 315 LIGFPNAGKSSI---INTLRKKKVCNVAPIPGETKVWQYVALMK 355 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,144,460 Number of Sequences: 5004 Number of extensions: 62328 Number of successful extensions: 152 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 150 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 361294920 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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