Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0713
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   113   2e-26
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   113   2e-26
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   8.8  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  113 bits (273), Expect = 2e-26
 Identities = 54/84 (64%), Positives = 61/84 (72%)
 Frame = -2

Query: 506 GGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYK 327
           GGRKRPV KG TYGKP   GVN LK  R+ +  AEE           L+SYWV QD++YK
Sbjct: 69  GGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYK 128

Query: 326 YFEVILVDPSHKAIRRDPKINWIV 255
           +FEVILVDPSHKAIRRDP+INWIV
Sbjct: 129 FFEVILVDPSHKAIRRDPRINWIV 152



 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 41/59 (69%), Positives = 50/59 (84%)
 Frame = -3

Query: 709 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 533
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQGY
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGY 59



 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 31/50 (62%), Positives = 37/50 (74%)
 Frame = -1

Query: 249 VHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100
           VHKHRE RGLTS G+ SRG+GKGHR++ +    + A WLR NTL LRR R
Sbjct: 155 VHKHRESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  113 bits (273), Expect = 2e-26
 Identities = 54/84 (64%), Positives = 61/84 (72%)
 Frame = -2

Query: 506 GGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYK 327
           GGRKRPV KG TYGKP   GVN LK  R+ +  AEE           L+SYWV QD++YK
Sbjct: 69  GGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYK 128

Query: 326 YFEVILVDPSHKAIRRDPKINWIV 255
           +FEVILVDPSHKAIRRDP+INWIV
Sbjct: 129 FFEVILVDPSHKAIRRDPRINWIV 152



 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 41/59 (69%), Positives = 50/59 (84%)
 Frame = -3

Query: 709 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 533
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQGY
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGY 59



 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 32/50 (64%), Positives = 37/50 (74%)
 Frame = -1

Query: 249 VHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100
           VHKHRE RGLTS G+ SRG+GKGHRY+ +    + A WLR NTL LRR R
Sbjct: 155 VHKHRESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 736 LLGLPQAAKMGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTR 605
           L+G P A K      I  L +KK+ +V       +VWQY  L +
Sbjct: 315 LIGFPNAGKSSI---INTLRKKKVCNVAPIPGETKVWQYVALMK 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,460
Number of Sequences: 5004
Number of extensions: 62328
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)