Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0713
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 1e-26
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 31 1.3
SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39) 30 2.3
SB_44915| Best HMM Match : VWA (HMM E-Value=0) 29 3.1
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32) 29 3.1
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 29 3.1
SB_21404| Best HMM Match : VWA (HMM E-Value=8.1e-27) 29 3.1
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4) 29 4.1
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33) 29 4.1
SB_42144| Best HMM Match : v110 (HMM E-Value=5.2) 29 5.4
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12) 28 9.4
SB_30928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 117 bits (281), Expect = 1e-26
Identities = 55/83 (66%), Positives = 63/83 (75%)
Frame = -2
Query: 506 GGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYK 327
GGRKRPV KGATYGKP + GVN+LK R+L+S+AEE L+SYWV QDS YK
Sbjct: 69 GGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYK 128
Query: 326 YFEVILVDPSHKAIRRDPKINWI 258
YFEVI+VDP HKAIRRD +INWI
Sbjct: 129 YFEVIMVDPFHKAIRRDARINWI 151
Score = 108 bits (260), Expect = 4e-24
Identities = 46/59 (77%), Positives = 55/59 (93%)
Frame = -3
Query: 709 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 533
MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQG+
Sbjct: 1 MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGF 59
Score = 71.7 bits (168), Expect = 6e-13
Identities = 31/49 (63%), Positives = 37/49 (75%)
Frame = -1
Query: 246 HKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100
HKHRE+RGLT+AG +RG+ KGH Y++ G SRRA W R NTL LRR R
Sbjct: 156 HKHRELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 620 PSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCASGGRKRPVAKGATYGKPKSH 450
P D+ AH+ P T ++PC C QNPC+ G + +TYG P+ +
Sbjct: 239 PKTDANGGMQIAHQLPYPPYTGQIPCLPSSCAPQNPCSPPG---CTPQYSTYGYPQGY 293
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = -2
Query: 662 RCYAFFVA---CESMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCASGGR 498
RCY VA C ++ P +D+ A + P T ++PC C QNPC+ G
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCSPPG- 760
Query: 497 KRPVAKGATYGKPKSHGVNQ 438
+ +T G P++ G Q
Sbjct: 761 --CTPQYSTSGYPQAPGYPQ 778
>SB_13379| Best HMM Match : WD40 (HMM E-Value=1.3e-39)
Length = 574
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 559 VFGLC--PALWAWERGAYESTDGTAILSHATKNA*HRSVFSYTTPEYICRHPS 711
V+ +C AL A+ + STDGT I+ + + VF+ T E +C HPS
Sbjct: 403 VYDVCLPKALPAYFQCVSASTDGTCIIWNLESFVRSQIVFANTMFEAVCYHPS 455
>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
Length = 541
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 530 CIQNPCASGGRKRPVAKGATY 468
C+ PCA+GG P++ G+ Y
Sbjct: 265 CLSKPCANGGTCSPISSGSDY 285
>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
Length = 318
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 530 CIQNPCASGGRKRPVAKGATY 468
C+ PCA+GG P++ G+ Y
Sbjct: 61 CLSKPCANGGTCSPISSGSDY 81
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 530 CIQNPCASGGRKRPVAKGATY 468
C+ PCA+GG P++ G+ Y
Sbjct: 416 CLSKPCANGGTCSPISSGSDY 436
>SB_21404| Best HMM Match : VWA (HMM E-Value=8.1e-27)
Length = 267
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 530 CIQNPCASGGRKRPVAKGATY 468
C+ PCA+GG P++ G+ Y
Sbjct: 5 CLSKPCANGGTCSPISSGSDY 25
>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
Length = 173
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 652 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 539
+F ++ YR+ T+MH +RP + R G+R KQ
Sbjct: 16 KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53
>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
Length = 300
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 249 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 160
+H + ++GLT A S LG GH YS+ K
Sbjct: 61 MHFDKMIKGLTGAMASKAQLGLGHSYSRAK 90
>SB_42144| Best HMM Match : v110 (HMM E-Value=5.2)
Length = 226
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 530 CIQNPCASGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAE 402
C Q GG P + + G P HGVN L ++ ++++E
Sbjct: 57 CEQQKIDDGGLIAPSLEDSEAGNPDRHGVNPLHKRKDNKTVSE 99
>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 548 C*TRLCCIQNPCASGGRKRPVAKG 477
C TR CI NPC +GG P G
Sbjct: 311 CQTRQYCIPNPCQNGGTCVPQENG 334
>SB_39950| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1249
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 169 RVSMSLAETSGAATSRSQTTHLTML--MYSITIQLILGSRRMALCDGSTRITSKYLYEES 342
RV LA+ + TS S+ +T +YS L R+ + D +I S + YEES
Sbjct: 505 RVYEVLADAARPVTSSSEVEEITASEPVYSPPTSLAEFISRLVMMDSEVKIKSLFRYEES 564
>SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)
Length = 828
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 421 LRVGFNWLTPWLLGLP*VAPLATG-RLRPPLAHG 519
L G LTP GL + PLATG R PLA G
Sbjct: 641 LATGLGTLTPLTTGLVTLTPLATGLGTRTPLATG 674
>SB_30928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 549 VLNKVMLYSESVCEWWPQASSC*GCHLWQAQEPWCQPVEAHAQPS 415
V+N +L V E+ Q C CH AQ+ W V+ + S
Sbjct: 121 VMNSTILQQVFVVEYVVQGQMCDACHRQAAQDFWKAVVQVRQKTS 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,465,774
Number of Sequences: 59808
Number of extensions: 518031
Number of successful extensions: 1355
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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