Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0713
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           107   1e-23
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           107   1e-23
At3g18050.1 68416.m02296 expressed protein                             29   2.5  
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    29   4.4  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  107 bits (256), Expect = 1e-23
 Identities = 46/83 (55%), Positives = 60/83 (72%)
 Frame = -2

Query: 506 GGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYK 327
           GGRKRPV KG  YGKP + GV QLK  R+ +S+AEE           ++SYW+ +DS+YK
Sbjct: 69  GGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYK 128

Query: 326 YFEVILVDPSHKAIRRDPKINWI 258
           Y+E+ILVDP+H A+R DP+INWI
Sbjct: 129 YYEIILVDPAHNAVRNDPRINWI 151



 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 42/59 (71%), Positives = 49/59 (83%)
 Frame = -3

Query: 709 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 533
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQG+
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGF 59



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
 Frame = -1

Query: 249 VHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100
           VHKHRE+RGLTS G+ +RGL GKGH   + +  SRRA W + N++ LRR R
Sbjct: 155 VHKHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSISLRRYR 204


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  107 bits (256), Expect = 1e-23
 Identities = 46/83 (55%), Positives = 60/83 (72%)
 Frame = -2

Query: 506 GGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYK 327
           GGRKRPV KG  YGKP + GV QLK  R+ +S+AEE           ++SYW+ +DS+YK
Sbjct: 69  GGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYK 128

Query: 326 YFEVILVDPSHKAIRRDPKINWI 258
           Y+E+ILVDP+H A+R DP+INWI
Sbjct: 129 YYEIILVDPAHNAVRNDPRINWI 151



 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 42/59 (71%), Positives = 49/59 (83%)
 Frame = -3

Query: 709 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 533
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQG+
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGF 59



 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
 Frame = -1

Query: 249 VHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 100
           VHKHRE+RGLTS G+ +RGL GKGH   + +  SRRA W + N+L LRR R
Sbjct: 155 VHKHRELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSLSLRRYR 204


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 571 CPALWAWERGAYESTDGTAILSHATKNA*HRSVFSYTTPE 690
           CP L AW   AY +T  +  +S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 356 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV--MLYISI 237
           YW+AQ + +    V+  D  H +   DPK+N +V  +L+ SI
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSI 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,729,873
Number of Sequences: 28952
Number of extensions: 342840
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)