Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0712
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    27   4.0  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    27   4.0  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   5.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   5.4  

>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 649 LWFIKFSRASPRYCNVIIQLIHQILNF*FDCG 744
           L F+K + A+ R  + +++LIH+ LN  F CG
Sbjct: 435 LCFVKSNEAAARL-HRLLELIHESLNQSFSCG 465


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 522 HLCACASFLTFTIA*KLT*FCKQLEQ 445
           H   CA+ +TF+IA K+   CK+L+Q
Sbjct: 264 HYFYCATPITFSIASKILSCCKKLKQ 289


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = -1

Query: 526  DPSVC-LCEFLNVHDSVKVNLIL*A-VGTAPLAANVRKRSHSI 404
            +P +C LC  L +HDS  V L++ A +   PL   V +++HS+
Sbjct: 1048 EPLLCTLCHLLVIHDSRTVGLVVNAFLAITPLL--VSEQAHSL 1088


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 143  IIMDMFTLYHCTILLYYWLSTGCYTIWH*YS 235
            ++  +  + HCT    Y LS+ C T+W+ YS
Sbjct: 1336 VLNTLSEVVHCTST--YALSSACLTVWNKYS 1364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,985
Number of Sequences: 5004
Number of extensions: 60639
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)