Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0712
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46285| Best HMM Match : DM (HMM E-Value=4.7)                        28   7.5  
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)                 28   7.5  

>SB_46285| Best HMM Match : DM (HMM E-Value=4.7)
          Length = 233

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 313 SCNVLHKNGPFKSERMTDSLKLLSDYAILV 224
           SCN+    G + ++R  DSL ++  YA+L+
Sbjct: 181 SCNLQVGRGSYNTDRCRDSLVIIETYALLL 210


>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
          Length = 342

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 346 LVLNSYCSLWKSCNVLHKNGPFKSERMTDSLKLLSDY 236
           L+L      +KS + LH + P  +ER+  S  +LSDY
Sbjct: 238 LILEVDLGYFKSLHNLHNDYPLAAERVNVSKDMLSDY 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,438,657
Number of Sequences: 59808
Number of extensions: 429896
Number of successful extensions: 667
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)