Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0711
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    69   6e-13
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    69   8e-13
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   4.1  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   5.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   7.2  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   9.6  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   9.6  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 69.3 bits (162), Expect = 6e-13
 Identities = 34/69 (49%), Positives = 42/69 (60%)
 Frame = +2

Query: 542 NVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYF 721
           + KGIP+FW    +NV  LSEM+   DE  L  L DI++   E P  F LEF FA N +F
Sbjct: 160 DTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFF 218

Query: 722 TNTVLTKGY 748
           TN +LTK Y
Sbjct: 219 TNKILTKTY 227



 Score = 35.9 bits (79), Expect = 0.007
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = +3

Query: 222 SDGIPT-PEC-SSRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNG 395
           S+G+   PE    RI  LR LQK + D+E++F  E+                 R+ +V G
Sbjct: 65  SEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRG 124

Query: 396 TYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKK 509
             EP ++E       D  E++   + ++     G++ K
Sbjct: 125 ADEPTEEEIKKGEAADENEKKEPTSSESKKQEGGDDTK 162


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 68.9 bits (161), Expect = 8e-13
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
 Frame = +2

Query: 539 PNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDPISFTLEFYFAPNE 715
           P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+   +  D   + LEF F  N+
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSND 220

Query: 716 YFTNTVLTKGYLMK 757
           YFTN +LTK Y  K
Sbjct: 221 YFTNKILTKTYYYK 234


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 463 LGRYKMLPSLRVRKRR*QGYRASNGSQCKGYPRLLVQHIQEC 588
           L  +  LP+ R   R    YR SNG   + Y  L V+ IQ C
Sbjct: 473 LTNFSHLPTARSVSRT---YRLSNGKSIQYYSTLFVRLIQSC 511


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 80  ERSTVPIFNISLSPPSKFSEKKDG 9
           ERS  P  ++S+S PS F +K+DG
Sbjct: 545 ERSLKPHTSLSISFPSDFLKKEDG 568


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 154  HLLKSGVTRNEMIAAITNRLHAEAMASLP 240
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 206 IAFMQKRWHPYPRMFVANPRLENSSEGVC 292
           IA    R HPY R     P+ +   +G+C
Sbjct: 667 IARRSNRHHPYSRPSSTRPQCQLEDQGIC 695


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 262 RIRDEHSGVGMPSLLHEGDL 203
           R+R+ H+G G    LHE D+
Sbjct: 46  RVRNSHNGFGFCEFLHEQDV 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,324
Number of Sequences: 5004
Number of extensions: 63615
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)