Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0711
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   1e-20
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 31   1.1  
SB_26003| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_31250| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)               29   3.4  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   7.7  
SB_37406| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25)                     28   7.7  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 49/100 (49%), Positives = 62/100 (62%), Gaps = 13/100 (13%)
 Frame = +2

Query: 506 EDDKAIEPPMDP-NVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKV-------- 658
           +D++ IE    P + KGIP+FW    +NV +LSEM+QEHDEPILK L D++V        
Sbjct: 223 DDEEKIETEQLPEDTKGIPEFWLTAMKNVELLSEMIQEHDEPILKHLHDVRVIFTGPEST 282

Query: 659 ----QMHEDPISFTLEFYFAPNEYFTNTVLTKGYLMKCNP 766
                    P+ F LEF+F PN +FTNTVLTK Y MKC P
Sbjct: 283 NTTQYPQPTPMGFVLEFHFTPNPFFTNTVLTKSYKMKCEP 322



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 29/82 (35%), Positives = 36/82 (43%)
 Frame = +3

Query: 285 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELA 464
           E   +E KFY EVHA               R  I +G  EP D+EC   W  D E+E+ A
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC--RWPSDAEDEDEA 198

Query: 465 RAVQNAAITEGEEKKMTRLSSL 530
                    E EEK+ T +S L
Sbjct: 199 E--------EKEEKEATEVSKL 212



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 760 QPDEESPLEFEGPEI 804
           +PDE+ P  FEGPEI
Sbjct: 321 EPDEDDPFSFEGPEI 335


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 259 IRDEHSG-VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 140
           +R + SG V +PS +HE D   PL F +GS +  T + L H
Sbjct: 199 VRTQASGPVPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_26003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 432 WRDDTEEEELARAVQNAAITEGEEKK-MTRLSSL 530
           W+++ EE+E  R   +   TEGEE++ M RLS L
Sbjct: 103 WKEEEEEDEAERESMDNTNTEGEEEEGMERLSDL 136


>SB_31250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = +2

Query: 530 PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKV---QMHEDPISFTLEF- 697
           P DP+ K I   W N+F    M + +++     + +CL +  +   Q H +P  + + + 
Sbjct: 110 PSDPSAKMILQPWRNVFSKGFMDAFVLRSIFPKLSQCLAEFVINPHQQHLEPFHWVMSWK 169

Query: 698 YFAPNEYFTNTVLTKGYLMKCNPMKR 775
              P ++F  ++L K +  K + ++R
Sbjct: 170 EIIPLQHFV-SLLDKHFFPKWSQVRR 194


>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 1354

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 515 KAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDE 625
           + I+PP+ P  K +PD   ++ R  + LS  + EH+E
Sbjct: 156 RKIKPPVPPKPKVMPDRAASLSRQSASLSRRIPEHNE 192


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 396 TYEPNDDECLNPWRDDTEEEEL 461
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_37406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 432 WRDDTEEEELARAVQNAAITEGEEKK-MTRLSSL 530
           W+++ +E+E  R   +   TEGEE++ M RLS L
Sbjct: 37  WKEEEDEDEAERESIDNPNTEGEEEEGMERLSDL 70


>SB_11722| Best HMM Match : Fer4 (HMM E-Value=0.25)
          Length = 401

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 432 WRDDTEEEELARAVQNAAITEGEEKK-MTRLSSL 530
           W+++ +E+E  R   +   TEGEE++ M RLS L
Sbjct: 309 WKEEEDEDEAERESIDNPNTEGEEEEGMERLSDL 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,026,924
Number of Sequences: 59808
Number of extensions: 496063
Number of successful extensions: 1116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)