Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0711
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    83   2e-16
Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical pr...    58   6e-09
Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical pr...    58   6e-09
AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of...    58   6e-09
U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    29   5.2  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 36/77 (46%), Positives = 48/77 (62%)
 Frame = +2

Query: 536 DPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNE 715
           DP+ KGI DFW    R   +++E ++EHD PIL  L D+     +DP  F +EF+FA N 
Sbjct: 107 DPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNP 166

Query: 716 YFTNTVLTKGYLMKCNP 766
           YF N VLTK YL+  +P
Sbjct: 167 YFKNQVLTKTYLLGFDP 183



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +3

Query: 255 RIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPW 434
           R+ AL+ LQ + + IE+ FY  VH                R  IV G  EP  ++   P 
Sbjct: 29  RVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPI 88

Query: 435 RDDTEEEELARAVQNA 482
            +  E ++LA   + A
Sbjct: 89  LEGLEGDQLAELYKAA 104


>Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical
           protein C27B7.1b protein.
          Length = 313

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +2

Query: 554 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 730
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 731 VLTKGY 748
           V+TK Y
Sbjct: 137 VITKSY 142


>Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical
           protein C27B7.1a protein.
          Length = 312

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +2

Query: 554 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 730
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 731 VLTKGY 748
           V+TK Y
Sbjct: 137 VITKSY 142


>AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of
           presenilin 2 protein.
          Length = 312

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +2

Query: 554 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 730
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 731 VLTKGY 748
           V+TK Y
Sbjct: 137 VITKSY 142


>U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical
           protein C09B9.2 protein.
          Length = 328

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 774 LFIGLHFIKYPLVSTVFVKYSFGAK*NSRVKLMGSSCICTLISCKHF 634
           LF+  HF+   L+ + F++ SF +K     ++ G S + ++ +C HF
Sbjct: 129 LFLSYHFVLLFLMFSFFLQSSFSSKSRFVEQIFGMSAVSSMSTCAHF 175


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -1

Query: 455 FFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 285
           + F +I P V T++++ F    + +  LFI   V+  I   FA  C   +    LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706

Query: 284 LLKS 273
           LL S
Sbjct: 707 LLAS 710


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 575  IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS 682
            IF  V +  + +  +  P+L  L  ++V  H+DP S
Sbjct: 1145 IFEQVRLEKDRLPANSYPVLSKLSTVRVSQHDDPTS 1180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,992,006
Number of Sequences: 27780
Number of extensions: 364191
Number of successful extensions: 1006
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)