Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0711
(806 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 75 6e-14
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 73 2e-13
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 69 3e-12
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil... 55 5e-08
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 50 1e-06
At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) famil... 46 2e-05
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 33 0.22
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 29 2.7
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,... 28 8.4
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 74.9 bits (176), Expect = 6e-14
Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Frame = +2
Query: 506 EDDKAIEPPMDPNV--KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPI 679
EDD ++ + KG+P FW +N ++SE + E DE LK L+DIK E+P
Sbjct: 109 EDDTKVDQGEEKTAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPK 168
Query: 680 SFTLEFYFAPNEYFTNTVLTKGYLM 754
F LEF+F N YF NTVLTK Y M
Sbjct: 169 GFKLEFFFDTNPYFKNTVLTKSYHM 193
Score = 36.3 bits (80), Expect = 0.024
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +3
Query: 237 TPECSSRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYE---- 404
TP R+ ALR +Q + ++EAKF E R IVNGT E
Sbjct: 48 TPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNGTTEVELA 107
Query: 405 PNDDECLNPWRDDTEEEE 458
P DD ++ + T EE+
Sbjct: 108 PEDDTKVDQGEEKTAEEK 125
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/69 (50%), Positives = 43/69 (62%)
Frame = +2
Query: 548 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 727
KG+PDFW +N + +E + E DE LK L+DIK E+P F LEF+F N YF N
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFFFDQNPYFKN 183
Query: 728 TVLTKGYLM 754
TVLTK Y M
Sbjct: 184 TVLTKTYHM 192
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/69 (47%), Positives = 42/69 (60%)
Frame = +2
Query: 548 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 727
KG+P FW +N ++SE + E DE L L+DIK E+P F LEF+F N YF N
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQNPYFKN 183
Query: 728 TVLTKGYLM 754
T+LTK Y M
Sbjct: 184 TLLTKAYHM 192
>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
protein similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 329
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +2
Query: 548 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPI-SFTLEFYFAPNEYFT 724
+G+P+FW + ML+ + E DE LK L+DI+ ED +F LEF F N YF
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVEDTSRNFKLEFLFDSNLYFK 185
Query: 725 NTVLTKGY 748
N+VL+K Y
Sbjct: 186 NSVLSKTY 193
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 545 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 721
+K IPDFW F + L E++ E D+ I K L + V+ +D S +++ F F PN +F
Sbjct: 70 IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSITFSFNPNPFF 129
Query: 722 TNTVLTKGY 748
+ LTK +
Sbjct: 130 EDGKLTKTF 138
>At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105 SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile:
PF00956 nucleosome assembly protein (NAP)
Length = 256
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 545 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 721
++ IP FW F + L +++ E D+ I K L ++V+ +D S +++ F+F N +F
Sbjct: 74 IQSIPGFWMTAFLSHPALGDLLTEEDQKIFKYLNSLEVEDAKDVKSGYSITFHFTSNPFF 133
Query: 722 TNTVLTKGY 748
+ LTK +
Sbjct: 134 EDAKLTKTF 142
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 205 NRLHAEAM-ASLPPNVRRESAP*ELFRRSLSTLRPSFTVKYMHSNANMKNFTSLFMKSE 378
N+ H++ + PPN RR+ AP F ++ RP+F V+ +H A + T L K E
Sbjct: 48 NQQHSQYHNTNFPPNYRRDRAPSSGFSPPVTRARPNFIVQLLHP-AAANSDTKLSKKQE 105
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 205 NRLHAE-AMASLPPNVRRESAP*ELFRRSLSTLRPSFTVKYMHSNA 339
N+ H++ ++ PPN RR+ P + ++ RP+F V+ +H A
Sbjct: 48 NQQHSQYPNSNFPPNYRRDRNPSSGYSPPVTRARPNFIVQLLHPAA 93
>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 848
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 381 LIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKMTRLSSL 530
++ G +DE L PW + EE+ R V + +K+ R SL
Sbjct: 190 MLAEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAV-MQKRRARAPSL 238
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,797,492
Number of Sequences: 28952
Number of extensions: 332027
Number of successful extensions: 842
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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