BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0710
(759 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533537-1|CAG38568.1| 463|Homo sapiens UBE1C protein. 33 0.85
AL096713-1|CAB46370.1| 1430|Homo sapiens hypothetical protein pr... 31 6.0
>CR533537-1|CAG38568.1| 463|Homo sapiens UBE1C protein.
Length = 463
Score = 33.5 bits (73), Expect = 0.85
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 595 FINNTITNFLCTVTTHIYTISDSQSTFLRRFF*INCYLCALL 470
F+N+ + N C V H Y I D TF R+F I C L +++
Sbjct: 131 FLNDRVPN--CNVVPHFYKIQDFNDTFYRQFHIIVCGLDSII 170
>AL096713-1|CAB46370.1| 1430|Homo sapiens hypothetical protein
protein.
Length = 1430
Score = 30.7 bits (66), Expect = 6.0
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -1
Query: 156 LNLHAYNTQQ-VPKYVQS--LEKIFEPNIDSYYSTCVIGNS 43
L LH TQ VP++V++ L F+PNI YY +I N+
Sbjct: 1126 LALHILRTQGLVPEHVETRTLHSTFQPNISRYYLRVIIWNT 1166
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,023,229
Number of Sequences: 237096
Number of extensions: 1637244
Number of successful extensions: 1832
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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