Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0710
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.2  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 280 YYPKLLFWVTGTNK*YYYKSTYISFILAKL*DIR 179
           YYP L  W+   +   YY ST I+ IL  L  I+
Sbjct: 301 YYPDLNEWLYILSGCLYYFSTTINPILYNLMSIK 334


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 108 FVHTLGLAVYYMRVNSA 158
           F   +GLA YY +VN A
Sbjct: 212 FTQDIGLAAYYAQVNLA 228


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 338 KNCFNNPGVYEWSLNLYQLILSQTV 264
           KNC ++  ++E   NL++ I  Q +
Sbjct: 316 KNCADSGSIWETGKNLFEFIRKQVL 340


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 593 EWPFSYYTK*CIMTNKFHSNYFSG 664
           +W F  Y+K   + NK  S+  +G
Sbjct: 383 QWQFDVYSKDVELANKMESSGMAG 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,650
Number of Sequences: 438
Number of extensions: 4075
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)