Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0710
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09640.1 68417.m01584 expressed protein several hypothetical ...    28   5.9  
At3g49320.1 68416.m05392 expressed protein contains Pfam profile...    28   5.9  
At1g76670.1 68414.m08921 transporter-related low similarity to g...    28   7.7  

>At4g09640.1 68417.m01584 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 386

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 622 LFCIITKGPFINNTITNFLCTVTTHIYTISDSQSTFL 512
           LFC+IT+  ++N  +  F   V + IY +  +  T L
Sbjct: 234 LFCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTIL 270


>At3g49320.1 68416.m05392 expressed protein contains Pfam profile
           PF03690: Uncharacterised protein family (UPF0160)
          Length = 354

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 216 IYRLF*QSYKIFA*WA*LLVLNLHAYNTQQVPKYVQS 106
           ++RLF   YK F      L   +H Y+T Q P+YV +
Sbjct: 139 VFRLFLAVYKNFIEAVDALDNGIHQYDTDQPPRYVNN 175


>At1g76670.1 68414.m08921 transporter-related low similarity to
           glucose-6-phosphate/phosphate-translocator precursor
           [Solanum tuberosum] GI:2997593, GDP-Mannose transporter
           [Arabidopsis thaliana] GI:15487237; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 347

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 169 GPSREYLITLLK*TIYMYFYNSIICLFLLPRITVWDNISWY 291
           GP  +YL++    + Y   Y +I C+ L   + V+ NIS Y
Sbjct: 206 GPFVDYLLSGKFISTYQMTYGAIFCILLSCALAVFCNISQY 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,160
Number of Sequences: 28952
Number of extensions: 238699
Number of successful extensions: 388
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)