Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0707
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 128 1e-30
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 77 4e-15
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 70 4e-13
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 66 5e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 61 1e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 53 4e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 50 5e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 49 6e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 49 8e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 46 8e-06
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 43 4e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 42 7e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 41 2e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 40 4e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 40 5e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 38 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.044
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 27 2.9
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 5.1
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 26 5.1
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 5.1
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 5.1
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 6.7
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 6.7
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 26 6.7
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 26 6.7
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 128 bits (308), Expect = 1e-30
Identities = 61/88 (69%), Positives = 70/88 (79%)
Frame = +2
Query: 263 DPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGT 442
DPNSPL+SVK+FE L LKP LLKG+Y+M F PSKIQE ALP LL++PP+NMI QSQSGT
Sbjct: 105 DPNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGT 164
Query: 443 GKTAAFVLAMLSRVDSNKNYPQYCVLVP 526
GKTAAF L MLSRVD++ PQ L P
Sbjct: 165 GKTAAFALTMLSRVDASVPKPQAICLAP 192
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/70 (38%), Positives = 42/70 (60%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITDHILIGTPGKMFDWGVKFG 702
P+ ELA Q +V +M K+ E+K + ++ + +P+G+KI I+IGTPG + D +K
Sbjct: 192 PSRELARQIMDVVTEMGKYT-EVKTAFGIK-DSVPKGAKIDAQIVIGTPGTVMDL-MKRR 248
Query: 703 MFDMGKIKVF 732
D IKVF
Sbjct: 249 QLDARDIKVF 258
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 76.6 bits (180), Expect = 4e-15
Identities = 34/80 (42%), Positives = 57/80 (71%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
+ TF+ ++LKP LL+G+YA GF PS IQ+ A+ +L + ++++AQ+QSGTGKTA F +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGE--RDVLAQAQSGTGKTATFSI 75
Query: 467 AMLSRVDSNKNYPQYCVLVP 526
++L ++D++ Q +L P
Sbjct: 76 SVLQKIDTSLKQCQALILAP 95
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 69.7 bits (163), Expect = 4e-13
Identities = 34/77 (44%), Positives = 53/77 (68%)
Frame = +2
Query: 296 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 475
FE +LK LL G++ GF PS IQE ++P L+ ++++A++++GTGKTAAFV+ L
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSG--RDILARAKNGTGKTAAFVIPSL 103
Query: 476 SRVDSNKNYPQYCVLVP 526
+VD+ K+ Q +LVP
Sbjct: 104 EKVDTKKSKIQTLILVP 120
Score = 35.9 bits (79), Expect = 0.006
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGS-KITD--HILIGTPGKMFDWGV 693
PT ELA+QT +V + K +K+ G L ++ D HI++GTPG++ D
Sbjct: 120 PTRELALQTSQVCKTLGKHM-NVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAG 178
Query: 694 KFGMFDMGKIKVF 732
K G+ D + F
Sbjct: 179 K-GVADFSECTTF 190
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 66.1 bits (154), Expect = 5e-12
Identities = 32/81 (39%), Positives = 52/81 (64%)
Frame = +2
Query: 284 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 463
+V +FE ++LK +LL+G+YA G+ PS +Q A+ + +++IAQ+QSGTGKTA F
Sbjct: 19 AVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG--RDVIAQAQSGTGKTATFS 76
Query: 464 LAMLSRVDSNKNYPQYCVLVP 526
+ +L +D + Q +L P
Sbjct: 77 IGILQSIDLSVRDTQALILSP 97
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD---HILIGTPGKMFD 684
PT ELA+Q V + ++ + G + K D H++ GTPG++ D
Sbjct: 97 PTRELAVQIQNVVLALGDHM-NVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTD 152
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 61.3 bits (142), Expect = 1e-10
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 10/165 (6%)
Frame = +2
Query: 284 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 463
S KTF +L P L + ++ F P+ +Q +P LA ++++AQ+++G+GKTAA++
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIP--LALEGKDLVAQARTGSGKTAAYL 69
Query: 464 LAML------SRVDSNKNYPQYCVLVPHMN*PYKLVKLLQKWQNFVLK*S*SMQLEGKNF 625
+ +L ++D N+ +LVP ++ +L+K F K + + +
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSS 129
Query: 626 PGVQKSQI----TFLLVLQERCLIGVSSLACLIWVKLKFFVLDEA 748
VQ+ + ++ RC++ V+S L KLKF V+DEA
Sbjct: 130 DTVQRPLLLDLPDIVIATPSRCVVHVAS-GVLPLDKLKFLVIDEA 173
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 53.2 bits (122), Expect = 4e-08
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Frame = +2
Query: 251 NKRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQS 430
N+R F+++ L LL+ ++ GF AP+ IQ +P LL ++++ +
Sbjct: 56 NRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG--RDVVGMA 113
Query: 431 QSGTGKTAAFVLAMLSRVDSN--KNYPQYCVLVPHMN*PYKLVKLLQ 565
++G+GKTAAFV+ M+ + S + + +L P+ + VK+++
Sbjct: 114 RTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVK 160
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 49.6 bits (113), Expect = 5e-07
Identities = 23/64 (35%), Positives = 39/64 (60%)
Frame = +2
Query: 296 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 475
F LKP LL+ + GF PS++Q+ +P + +++ Q++SG GKTA FVL+ L
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILG--TDVLCQAKSGMGKTAVFVLSTL 110
Query: 476 SRVD 487
+++
Sbjct: 111 QQIE 114
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +1
Query: 526 TYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKI------TDHILIGTPGKM 678
T ELA Q A+ +K+ P+++ G + + + + HI++ TPG++
Sbjct: 128 TRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL 184
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 49.2 bits (112), Expect = 6e-07
Identities = 21/64 (32%), Positives = 44/64 (68%)
Frame = +2
Query: 293 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 472
+F++++L +LKG+ +GF P++IQ+ +P L ++++ + +G+GKTAAF++ +
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLG--KDIVGAAVTGSGKTAAFIVPI 317
Query: 473 LSRV 484
L R+
Sbjct: 318 LERL 321
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 48.8 bits (111), Expect = 8e-07
Identities = 28/87 (32%), Positives = 49/87 (56%)
Frame = +2
Query: 290 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 469
KTF+ L + L + +GF P+ IQ+ A+P +L +++I +Q+G+GKTAAF L
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVL--NKRDVIGLAQTGSGKTAAFALP 103
Query: 470 MLSRVDSNKNYPQYCVLVPHMN*PYKL 550
++ + +N + VL P Y++
Sbjct: 104 VIQELWNNPSPFFAVVLAPTRELAYQI 130
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 45.6 bits (103), Expect = 8e-06
Identities = 22/74 (29%), Positives = 45/74 (60%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
++ F L L N+ K + MGF ++IQ+ ++P LLA ++++ +++G+GKT AF++
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG--RDVLGAAKTGSGKTLAFLI 145
Query: 467 AMLSRVDSNKNYPQ 508
+ + + K P+
Sbjct: 146 PTIEMLYALKFKPR 159
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 43.2 bits (97), Expect = 4e-05
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Frame = +2
Query: 191 YFSFNENHTARSS*I*TRYRNKRK----DPNSPLYSVKTFEALHLKPNLLKGVYAMGFNA 358
++ +EN RS T YR +++ N P V TFE +LK V +GF A
Sbjct: 86 FYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPK-PVTTFEEAGFPNYVLKEVKQLGFEA 144
Query: 359 PSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 490
P+ IQ+ A P +A ++M+ S +G+GKT ++ L + +++
Sbjct: 145 PTPIQQQAWP--MAMSGRDMVGISATGSGKTLSYCLPAIVHINA 186
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 42.3 bits (95), Expect = 7e-05
Identities = 20/63 (31%), Positives = 39/63 (61%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
++ +E L +LK + + + PS IQ A+P LL +++I +++G+GKTAAF++
Sbjct: 248 LRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQR--KDLIGIAETGSGKTAAFII 305
Query: 467 AML 475
++
Sbjct: 306 PLI 308
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/64 (29%), Positives = 40/64 (62%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
V F + L +LL+ + G+ P+ +Q+ ++P + + ++++A +Q+G+GKTA F+
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSG--RDLMACAQTGSGKTAGFLF 225
Query: 467 AMLS 478
+LS
Sbjct: 226 PILS 229
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = +2
Query: 344 MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 484
M +AP+ IQ LP LL ++ ++Q+G+GKT A++L ++ R+
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRL 203
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = +2
Query: 290 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 469
K+F L + P L+ + A+ P+ IQE + +L +N I +++G+GKTAAF L
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEG--RNCIGGAKTGSGKTAAFALP 64
Query: 470 MLSR 481
++ +
Sbjct: 65 IIEK 68
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYA--VRGEELPRGS---KITDHILIGTPGKMFD 684
PT ELAIQ E A + + LK+A V G ++ R S H+++ TPG++ D
Sbjct: 83 PTRELAIQIDEQFAALGA---NLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLAD 138
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/64 (26%), Positives = 38/64 (59%)
Frame = +2
Query: 293 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 472
+F+++++ L V A GF + +Q A+P L + ++++ ++ +G+GKT A++L
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKN--KDLVVEAVTGSGKTLAYLLPC 59
Query: 473 LSRV 484
+V
Sbjct: 60 FDKV 63
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.1 bits (72), Expect = 0.044
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = +2
Query: 242 RYRNKRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 421
R+ + K L+S E L + GF + +Q+ L + + +N +
Sbjct: 26 RWNSTMKSQQPTLFS----EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNE-ENAV 80
Query: 422 AQSQSGTGKTAAFVLAMLSRVDSNK 496
Q+++GTGKT AF+L V K
Sbjct: 81 VQAKTGTGKTLAFLLVAFKDVLKGK 105
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/45 (24%), Positives = 29/45 (64%)
Frame = +2
Query: 362 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK 496
++IQ+ +P+ L ++++ +++G+GKT AF++ ++ + K
Sbjct: 63 TEIQKQCIPSALKG--RDILGAAKTGSGKTLAFIVPLIENLYRKK 105
Score = 25.4 bits (53), Expect = 8.9
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAK---FCPEIKLKYAVRGEELPRGSKITDHILIGTPGKM 678
PT ELAIQT E K+ + F + + EE R S++ +IL+ TPG++
Sbjct: 119 PTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM--NILVCTPGRL 171
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 495 LLESTLLNIAKTKAAVFPVPDCDW 424
++E +LLN A A FP DW
Sbjct: 290 MMEQSLLNFAYNSAGAFPWESLDW 313
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 284 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 421
S F A LK + + A N P+ ++ T + T+L P QN++
Sbjct: 357 SENPFIAHELKQTSVNEITAHVINEPASLKLTTISTILHAPLQNLL 402
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 755 DIWLRLTQKTLIL---PISNMPNLTPQSNIFPGVPIRM*SVIFEPLGSSS 615
D+ + T KT L P++ +PNL P + + I + +V+ E LGS +
Sbjct: 343 DLDVYFTYKTFALRGTPVNELPNLDPSESRWKAEDIIVEAVLGELLGSQN 392
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 599 SMQLEGKNFPGVQKSQITFLLVLQERCL-IGVS-SLACLIWVKLKFFVLDE 745
SM L +N P V+ + +T L+ L CL G+S ++ L+W + +L++
Sbjct: 427 SMVLGSRNLPTVKNAAMTTLIALIYACLRPGISDAMLSLLWDSVIVNILEK 477
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 126 LDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDIE 251
+D+ + D +PDTP+A+ + + LVE + I+
Sbjct: 865 VDRSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQIK 906
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 344 MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 490
+ + ++IQ P + +NM+ + +G GKT +LAML + +
Sbjct: 273 LSYQTLNRIQSLVYP-IAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 591 KVKVCS*RGRTSQGFKNHRSHSY 659
+ +VCS R + G K HR+HS+
Sbjct: 400 RCEVCSKRYKNLNGLKYHRTHSH 422
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 6.7
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRG---EELPRGSKITDHILIGTPGKMFDWGV 693
PT ELAIQT E + + +K G E R +K ++IGTPG++ D +
Sbjct: 244 PTRELAIQTYENLNSLIQGT-NLKAVVVYGGAPKSEQARAAKNAS-VIIGTPGRLLDL-I 300
Query: 694 KFGMFDMGKI 723
G D ++
Sbjct: 301 NDGSIDCSQV 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,165
Number of Sequences: 5004
Number of extensions: 67076
Number of successful extensions: 243
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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