Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0707
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       44   2e-06
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.33 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 20/64 (31%), Positives = 43/64 (67%)
 Frame = +2

Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
           +++FEA  L+  +L  +   G+  P+ +Q+ ALP ++    ++++A +Q+G+GKTAAF +
Sbjct: 195 IESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNG--RDLMACAQTGSGKTAAFAV 252

Query: 467 AMLS 478
            +++
Sbjct: 253 PIIN 256



 Score = 24.6 bits (51), Expect = 1.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL--PRGSKITD-HILIGTPGKMFDW 687
           PT EL IQ  +   K +     +K   A  G  +   RG      HIL+ TPG++ D+
Sbjct: 281 PTRELTIQIWQQIVKFS-LNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDF 337


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 34  NKDSSKS*IWLASGDKRQKSWRFQIKLQGWAWIKNIIKKQILMMYL 171
           N+D + S   L S DK+Q +WR    L GW+    I    I+M+ +
Sbjct: 373 NEDDNTS---LVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLII 415


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 257 RKDPNSPLYSVKTFEALHLKPNLL 328
           R   NSPL  ++  + LHL+ N +
Sbjct: 226 RLQENSPLLDLRQLQELHLQRNAI 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,049
Number of Sequences: 438
Number of extensions: 4741
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)