Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0707
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 85 5e-17
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 71 8e-13
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 71 8e-13
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 68 8e-12
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 68 8e-12
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 66 2e-11
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 62 5e-10
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 60 1e-09
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 59 3e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 59 3e-09
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 57 1e-08
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 57 1e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 52 5e-07
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 51 7e-07
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 51 7e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 48 5e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 48 7e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 7e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 48 7e-06
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 47 1e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 47 2e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 45 5e-05
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 45 6e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 44 8e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 8e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 44 1e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 1e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 43 2e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 43 2e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 43 2e-04
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 41 8e-04
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 41 8e-04
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 41 8e-04
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 40 0.001
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 40 0.001
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 40 0.002
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 40 0.002
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 38 0.005
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 38 0.005
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 38 0.005
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 37 0.013
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 36 0.029
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 36 0.029
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 35 0.051
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 35 0.067
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 35 0.067
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 34 0.089
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 34 0.089
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 34 0.089
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 33 0.21
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 33 0.21
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 33 0.27
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 33 0.27
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 32 0.48
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 31 0.63
At5g15570.1 68418.m01823 expressed protein hypothetical protein ... 31 1.1
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin... 30 1.5
At1g50360.1 68414.m05645 myosin family protein contains Pfam pro... 30 1.9
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 29 4.4
At3g59730.1 68416.m06664 receptor lectin kinase, putative simila... 28 5.9
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 28 5.9
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 28 5.9
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 85.0 bits (201), Expect = 5e-17
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Frame = +2
Query: 269 NSPLYSVKTFEALHLKPNLLKGVYA-MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTG 445
++P S FE L+L P L+KG+Y M F PSKIQ +LP ++ P +++IAQ+ +G+G
Sbjct: 84 DTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSG 143
Query: 446 KTAAFVLAMLSRVDSNKNYPQYCVLVPHMN*PYKLVKLLQKWQNF 580
KT FVL MLSRVD PQ + P + +++LQK F
Sbjct: 144 KTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKF 188
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFC---PEIKLKYAVRGEELP-RGSKITDHILIGTPGKMFDWG 690
PT ELA Q EV KM KF E+ + + RG RG+ ++ H++IGTPG + W
Sbjct: 170 PTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKW- 228
Query: 691 VKFGMFDMGKIKV 729
+ F + +K+
Sbjct: 229 MAFKRLGLNHLKI 241
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 70.9 bits (166), Expect = 8e-13
Identities = 34/77 (44%), Positives = 50/77 (64%)
Frame = +2
Query: 296 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 475
FE LK +LLKG+Y GF PS IQE ++P L +++A++++GTGKT AF + +L
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPVL 183
Query: 476 SRVDSNKNYPQYCVLVP 526
++D N N Q +LVP
Sbjct: 184 EKIDPNNNVIQAMILVP 200
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD---HILIGTPGKMFD 684
PT ELA+QT +V +++K+ I++ G L H+L+GTPG++ D
Sbjct: 200 PTRELALQTSQVCKELSKYL-NIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 70.9 bits (166), Expect = 8e-13
Identities = 34/77 (44%), Positives = 50/77 (64%)
Frame = +2
Query: 296 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 475
FE LK +LLKG+Y GF PS IQE ++P L +++A++++GTGKT AF + +L
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPVL 183
Query: 476 SRVDSNKNYPQYCVLVP 526
++D N N Q +LVP
Sbjct: 184 EKIDPNNNVIQAMILVP 200
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD---HILIGTPGKMFD 684
PT ELA+QT +V +++K+ I++ G L H+L+GTPG++ D
Sbjct: 200 PTRELALQTSQVCKELSKYL-NIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 67.7 bits (158), Expect = 8e-12
Identities = 32/77 (41%), Positives = 50/77 (64%)
Frame = +2
Query: 296 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 475
FE LK LL G+Y GF PS IQE ++P L ++++A++++GTGKTAAF + +L
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTAAFCIPVL 190
Query: 476 SRVDSNKNYPQYCVLVP 526
++D + N Q ++VP
Sbjct: 191 EKIDQDNNVIQAVIIVP 207
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG-SKITD--HILIGTPGKMFD 684
PT ELA+QT +V ++ K +I++ G L ++ H+L+GTPG++ D
Sbjct: 207 PTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 67.7 bits (158), Expect = 8e-12
Identities = 32/77 (41%), Positives = 50/77 (64%)
Frame = +2
Query: 296 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 475
FE LK LL G+Y GF PS IQE ++P L ++++A++++GTGKTAAF + +L
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTAAFCIPVL 190
Query: 476 SRVDSNKNYPQYCVLVP 526
++D + N Q ++VP
Sbjct: 191 EKIDQDNNVIQAVIIVP 207
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG-SKITD--HILIGTPGKMFD 684
PT ELA+QT +V ++ K +I++ G L ++ H+L+GTPG++ D
Sbjct: 207 PTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/77 (41%), Positives = 48/77 (62%)
Frame = +2
Query: 296 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 475
FE LK +LL+G+Y GF PS IQE ++P L +++A++++GTGKT AF + L
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPTL 213
Query: 476 SRVDSNKNYPQYCVLVP 526
++D N Q +LVP
Sbjct: 214 EKIDPENNVIQAVILVP 230
Score = 34.3 bits (75), Expect = 0.089
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRG-SKITD--HILIGTPGKMFDWGV 693
PT ELA+QT +V +++K+ +I++ G L ++ H+L+GTPG++ D
Sbjct: 230 PTRELALQTSQVCKELSKYL-KIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAK 288
Query: 694 K 696
K
Sbjct: 289 K 289
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/91 (36%), Positives = 54/91 (59%)
Frame = +2
Query: 293 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 472
+F+A+ L+P+LL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F +
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKG--LDVIQQAQSGTGKTATFCSGV 99
Query: 473 LSRVDSNKNYPQYCVLVPHMN*PYKLVKLLQ 565
L ++D + Q VL P ++ K+++
Sbjct: 100 LQQLDISLVQCQALVLAPTRELAQQIEKVMR 130
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +1
Query: 445 KNCCLCFSDVKQXXXXXXXXXXXXXXPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 624
K C ++Q PT ELA Q +V + + +K + V G +
Sbjct: 91 KTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLG-VKAQACVGGTSV 149
Query: 625 PRGSKITD---HILIGTPGKMFD 684
++ H+++GTPG++FD
Sbjct: 150 REDQRVLQSGVHVVVGTPGRVFD 172
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 60.5 bits (140), Expect = 1e-09
Identities = 33/92 (35%), Positives = 54/92 (58%)
Frame = +2
Query: 290 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 469
++F+A+ L+ NLL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSG 96
Query: 470 MLSRVDSNKNYPQYCVLVPHMN*PYKLVKLLQ 565
+L ++D + Q VL P ++ K+++
Sbjct: 97 VLQQLDFSLIQCQALVLAPTRELAQQIEKVMR 128
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +1
Query: 445 KNCCLCFSDVKQXXXXXXXXXXXXXXPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 624
K C ++Q PT ELA Q +V + + +K+ V G +
Sbjct: 89 KTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLG-VKVHACVGGTSV 147
Query: 625 PRGSKITD---HILIGTPGKMFD 684
+I H+++GTPG++FD
Sbjct: 148 REDQRILQAGVHVVVGTPGRVFD 170
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 59.3 bits (137), Expect = 3e-09
Identities = 30/80 (37%), Positives = 50/80 (62%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
+ +F + +K ++L+GVY GF PS IQ+ A+ +L +++IAQ+QSGTGKT+ L
Sbjct: 34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQG--RDVIAQAQSGTGKTSMIAL 91
Query: 467 AMLSRVDSNKNYPQYCVLVP 526
++ VD++ Q +L P
Sbjct: 92 SVCQVVDTSSREVQALILSP 111
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/92 (35%), Positives = 53/92 (57%)
Frame = +2
Query: 290 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 469
++F+A+ L+ NLL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSG 96
Query: 470 MLSRVDSNKNYPQYCVLVPHMN*PYKLVKLLQ 565
+L ++D Q VL P ++ K+++
Sbjct: 97 VLQQLDYALLQCQALVLAPTRELAQQIEKVMR 128
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +1
Query: 445 KNCCLCFSDVKQXXXXXXXXXXXXXXPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 624
K C ++Q PT ELA Q +V + + +K+ V G +
Sbjct: 89 KTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSV 147
Query: 625 PRGSKITD---HILIGTPGKMFD 684
+I H+++GTPG++FD
Sbjct: 148 REDQRILQAGVHVVVGTPGRVFD 170
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/80 (36%), Positives = 50/80 (62%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
+K+F+ + + +L+GVY G+ PS+IQ+ AL +L +++IAQ+QSGTGKT+ +
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKG--RDVIAQAQSGTGKTSMIAI 78
Query: 467 AMLSRVDSNKNYPQYCVLVP 526
++ V+ + Q VL P
Sbjct: 79 SVCQIVNISSRKVQVLVLSP 98
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/71 (38%), Positives = 45/71 (63%)
Frame = +2
Query: 272 SPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 451
SPL+S K+FE L L +LL + GF+ P+ +Q A+P ++ + + QS +G+GKT
Sbjct: 104 SPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG--HDAVIQSYTGSGKT 161
Query: 452 AAFVLAMLSRV 484
A++L +LS +
Sbjct: 162 LAYLLPILSEI 172
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/63 (34%), Positives = 42/63 (66%)
Frame = +2
Query: 296 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 475
FE+L+L PN+ + G+ P+ IQ +P +L+ +++A +++G+GKTAAF++ ML
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG--VDVVAMARTGSGKTAAFLIPML 87
Query: 476 SRV 484
++
Sbjct: 88 EKL 90
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 51.2 bits (117), Expect = 7e-07
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
Frame = +2
Query: 296 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 475
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
Query: 476 SRVDSNKNYPQYCVLVPHMN*PYKLVKLLQKWQNFVLK*S*SMQLEGKNF---PGVQKSQ 646
+++ + VL Y++ ++ ++ S+ G N + K++
Sbjct: 106 QQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNE 165
Query: 647 ITFLLVLQERCLIGVSSLACLIWVKLKFFVLDE 745
++V ++ ++ L ++ F+LDE
Sbjct: 166 CPHIVVGTPGRVLALAREKDLSLKNVRHFILDE 198
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 51.2 bits (117), Expect = 7e-07
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
Frame = +2
Query: 296 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 475
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
Query: 476 SRVDSNKNYPQYCVLVPHMN*PYKLVKLLQKWQNFVLK*S*SMQLEGKNF---PGVQKSQ 646
+++ + VL Y++ ++ ++ S+ G N + K++
Sbjct: 106 QQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNE 165
Query: 647 ITFLLVLQERCLIGVSSLACLIWVKLKFFVLDE 745
++V ++ ++ L ++ F+LDE
Sbjct: 166 CPHIVVGTPGRVLALAREKDLSLKNVRHFILDE 198
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
VKTF L ++ L+K +G+ PSKIQ ALP L +++I +Q+G+GKT AF +
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEG--KDVIGLAQTGSGKTGAFAI 65
Query: 467 AML 475
+L
Sbjct: 66 PIL 68
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 48.0 bits (109), Expect = 7e-06
Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 7/172 (4%)
Frame = +2
Query: 254 KRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 433
++K + + + KTFE+L L N K + MGF ++IQ A+P L+ ++++ ++
Sbjct: 142 EKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMG--EDVLGAAR 199
Query: 434 SGTGKTAAFVL---AMLSRVD-SNKNYPQYCVLVPHMN---*PYKLVKLLQKWQNFVLK* 592
+G+GKT AF++ +L RV + +N V+ P Y + K L K+ + +
Sbjct: 200 TGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGK 259
Query: 593 S*SMQLEGKNFPGVQKSQITFLLVLQERCLIGVSSLACLIWVKLKFFVLDEA 748
+ + K + + L+ R L + + I+ LKF V+DEA
Sbjct: 260 VIGGE-KRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEA 310
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 272 SPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 448
S Y KT F+ L P LKG+ GF + +QE LP +L ++++A++++GTGK
Sbjct: 73 SDSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQG--KDILAKAKTGTGK 130
Query: 449 TAAFVLAMLSRV 484
T AF+L + V
Sbjct: 131 TVAFLLPSIEAV 142
Score = 34.7 bits (76), Expect = 0.067
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELP----RGSKITDHILIGTPGKMFD 684
PT ELA Q A + K+ P I ++ + G +LP R K IL+ TPG++ D
Sbjct: 164 PTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKD 221
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Frame = +2
Query: 290 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 469
K+FE L L L++ + G P+ IQ++A+P +L ++++A++++G+GKT A++L
Sbjct: 46 KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG--KDVVARAKTGSGKTLAYLLP 103
Query: 470 MLSR------VDSNKNYPQYCVLVP 526
+L + V K P +LVP
Sbjct: 104 LLQKLFSADSVSKKKLAPSAFILVP 128
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/66 (39%), Positives = 41/66 (62%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
++++E L LLK V G+ PS IQ A+P L +++I +++G+GKTAAFVL
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIP--LGLQQRDVIGIAETGSGKTAAFVL 369
Query: 467 AMLSRV 484
ML+ +
Sbjct: 370 PMLAYI 375
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/65 (35%), Positives = 41/65 (63%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
V TF + L P LL + G++ P+ IQ A+P L ++++A + +G+GKTA+F++
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTG--KSLLASADTGSGKTASFLV 166
Query: 467 AMLSR 481
++SR
Sbjct: 167 PIISR 171
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 272 SPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 448
S Y KT F+ L P LK + GF + +QE LP +L ++++A++++GTGK
Sbjct: 375 SDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQG--KDVLAKAKTGTGK 432
Query: 449 TAAFVLAMLSRV 484
T AF+L + V
Sbjct: 433 TVAFLLPAIEAV 444
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD----HILIGTPGKMFD 684
PT ELA Q A + K+ P I ++ + G +LP + IL+ TPG++ D
Sbjct: 466 PTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKD 523
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/66 (34%), Positives = 39/66 (59%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
VKTFE ++ + + P+ IQ ALP +L+ +++I +++G+GKTAAFVL
Sbjct: 227 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSG--RDVIGIAKTGSGKTAAFVL 284
Query: 467 AMLSRV 484
M+ +
Sbjct: 285 PMIVHI 290
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +2
Query: 242 RYRNKRKDPNSP-LYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNM 418
R RNK KD +S KTF + +++K + F+ P+ IQ A ++ ++
Sbjct: 357 RERNKTKDTRETGFFSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDG--KSC 414
Query: 419 IAQSQSGTGKTAAFVLAMLSRV 484
I QSG+GKT A+++ ++ R+
Sbjct: 415 IIADQSGSGKTLAYLVPVIQRL 436
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/74 (32%), Positives = 42/74 (56%)
Frame = +2
Query: 263 DPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGT 442
+P+S S FE L L ++ +G P+ +Q +P +LA ++++ +Q+G+
Sbjct: 49 NPSSDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAG--RDVLGLAQTGS 106
Query: 443 GKTAAFVLAMLSRV 484
GKTAAF L +L R+
Sbjct: 107 GKTAAFALPILHRL 120
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/78 (29%), Positives = 43/78 (55%)
Frame = +2
Query: 251 NKRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQS 430
+K ++ N + F+ L P LK + G+ + +QE LP +L ++++A++
Sbjct: 41 DKTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKG--KDVLAKA 98
Query: 431 QSGTGKTAAFVLAMLSRV 484
++GTGKT AF+L + V
Sbjct: 99 KTGTGKTVAFLLPSIEVV 116
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +2
Query: 281 YSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF 460
+ TF L+L LL+ +G+ P+ IQ +P L +++ A + +G+GKTAAF
Sbjct: 164 FHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTG--RDLCASAITGSGKTAAF 221
Query: 461 VLAMLSRV 484
L L R+
Sbjct: 222 ALPTLERL 229
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/69 (31%), Positives = 41/69 (59%)
Frame = +2
Query: 320 NLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKN 499
++L + +GF P+ IQ ALPTL ++ I +Q+G+GKT ++L + S ++ ++
Sbjct: 86 HILHRMEEIGFVFPTDIQREALPTLFTG--RDCILHAQTGSGKTLTYLLLIFSLINPQRS 143
Query: 500 YPQYCVLVP 526
Q ++VP
Sbjct: 144 SVQAVIVVP 152
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/77 (27%), Positives = 44/77 (57%)
Frame = +2
Query: 254 KRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 433
++++P+ +YS K F+ + P LK + A G +++Q+ L L ++ + +++
Sbjct: 363 EKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDG--KDALVKAK 420
Query: 434 SGTGKTAAFVLAMLSRV 484
+GTGK+ AF+L + V
Sbjct: 421 TGTGKSMAFLLPAIETV 437
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/77 (27%), Positives = 44/77 (57%)
Frame = +2
Query: 254 KRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 433
++++P+ +YS K F+ + P LK + A G +++Q+ L L ++ + +++
Sbjct: 316 EKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDG--KDALVKAK 373
Query: 434 SGTGKTAAFVLAMLSRV 484
+GTGK+ AF+L + V
Sbjct: 374 TGTGKSMAFLLPAIETV 390
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = +2
Query: 293 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLI 214
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = +2
Query: 293 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLI 214
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = +2
Query: 293 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLI 214
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
+K F+ + N+L+ + +GF P+ IQ P L +++I +++G+GKT A++L
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLL 221
Query: 467 AMLSRVDSNKNYPQ 508
L V + Q
Sbjct: 222 PALVHVSAQPRLGQ 235
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
+K F+ + N+L+ + +GF P+ IQ P L +++I +++G+GKT A++L
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLL 221
Query: 467 AMLSRVDSNKNYPQ 508
L V + Q
Sbjct: 222 PALVHVSAQPRLGQ 235
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/66 (33%), Positives = 39/66 (59%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
V TF + L L + + P+ +Q A+P LLA+ ++++A +Q+G+GKTAAF
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE--RDLMACAQTGSGKTAAFCF 207
Query: 467 AMLSRV 484
++S +
Sbjct: 208 PIISGI 213
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/66 (33%), Positives = 39/66 (59%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
V TF + L L + + P+ +Q A+P LLA+ ++++A +Q+G+GKTAAF
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE--RDLMACAQTGSGKTAAFCF 207
Query: 467 AMLSRV 484
++S +
Sbjct: 208 PIISGI 213
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
V TF + L L + + P+ +Q A+P L A ++++A +Q+G+GKTAAF
Sbjct: 145 VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAG--RDLMACAQTGSGKTAAFCF 202
Query: 467 AMLSRV 484
++S +
Sbjct: 203 PIISGI 208
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +2
Query: 323 LLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 484
+L+ + +GF P+ IQ A+P LL+ + A + +G+GKT AF+ ML ++
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSG--RECFACAPTGSGKTFAFICPMLIKL 203
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +2
Query: 272 SPLYSVKTFEALHLKPNLLKGVYA-MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 448
S L++ +F +L L L + MGF AP+ +Q A+P +L+ ++++ + +GTGK
Sbjct: 23 SGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSG--RDVLVNAPTGTGK 80
Query: 449 TAAFVLAMLSRVDSN 493
T A++ ++ + +
Sbjct: 81 TIAYLAPLIHHLQGH 95
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
V TF + L L + + P+ +Q A+P LL ++++A +Q+G+GKTAAF
Sbjct: 158 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEG--RDLMACAQTGSGKTAAFCF 215
Query: 467 AMLSRV 484
++S +
Sbjct: 216 PIISGI 221
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
+K F+ + +L + G P+ IQ LP +LA ++MI + +G+GKT FVL
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAG--RDMIGIAFTGSGKTLVFVL 202
Query: 467 AML 475
M+
Sbjct: 203 PMI 205
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
+K + L +L + + + P IQ ALP +++ ++ I +++G+GKT FVL
Sbjct: 528 IKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSG--RDCIGVAKTGSGKTLGFVL 585
Query: 467 AMLSRV 484
ML +
Sbjct: 586 PMLRHI 591
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 35.1 bits (77), Expect = 0.051
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
+K F + LL+ + G P+ IQ LP +L+ ++MI + +G+GKT FVL
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVL 153
Query: 467 AML 475
M+
Sbjct: 154 PMI 156
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 34.7 bits (76), Expect = 0.067
Identities = 16/44 (36%), Positives = 31/44 (70%)
Frame = +2
Query: 335 VYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
VY+ GF+APS IQ + P +A ++++A +++G+GKT +++
Sbjct: 244 VYSAGFSAPSPIQAQSWP--IAMQNRDIVAIAKTGSGKTLGYLI 285
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 34.7 bits (76), Expect = 0.067
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 311 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 484
L +L + + + P IQ ALP +++ ++ I +++G+GKT FVL ML +
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSG--RDCIGVAKTGSGKTLGFVLPMLRHI 458
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 34.3 bits (75), Expect = 0.089
Identities = 15/65 (23%), Positives = 36/65 (55%)
Frame = +2
Query: 311 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 490
L ++++ + GF + +Q +P L + ++++ + +G+GKT AF+L + +
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSH--KDVVVDAATGSGKTLAFLLPFIEIIRR 80
Query: 491 NKNYP 505
+ +YP
Sbjct: 81 SNSYP 85
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD----HILIGTPGKMFDWG 690
PT EL+ Q +VA P + V G E+ + ++LIGTPG++ D
Sbjct: 98 PTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMM 157
Query: 691 VKFGMFDMGKIKV 729
+ D +++
Sbjct: 158 KRMEFLDFRNLEI 170
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 34.3 bits (75), Expect = 0.089
Identities = 15/65 (23%), Positives = 36/65 (55%)
Frame = +2
Query: 311 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 490
L ++++ + GF + +Q +P L + ++++ + +G+GKT AF+L + +
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSH--KDVVVDAATGSGKTLAFLLPFIEIIRR 81
Query: 491 NKNYP 505
+ +YP
Sbjct: 82 SNSYP 86
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 34.3 bits (75), Expect = 0.089
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
VK+F + +L+ V GF P+ IQ P +A +++I +++G+GKT +++L
Sbjct: 98 VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWP--MAMKGRDLIGIAETGSGKTLSYLL 155
Query: 467 AMLSRVDS 490
+ V++
Sbjct: 156 PAIVHVNA 163
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 33.1 bits (72), Expect = 0.21
Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 7/161 (4%)
Frame = +2
Query: 287 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
V+ F L + +G+ + + +Q A+P L ++++ +++G+GKT AFV+
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCG--RDILGAARTGSGKTLAFVI 127
Query: 467 AMLSRVDSNKNYPQ---YCVLV-PHMN*PYKLVKLLQKWQNFVLK*S*SMQLEGKNFPGV 634
+L ++ + P+ C+++ P + +L K F K S + + G+ V
Sbjct: 128 PILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKF-HKFSAGLLIGGREGVDV 186
Query: 635 QKSQI---TFLLVLQERCLIGVSSLACLIWVKLKFFVLDEA 748
+K ++ L+ R L + +L+ +LDEA
Sbjct: 187 EKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILILDEA 227
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +2
Query: 305 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 484
L + P ++K + + G IQ+ L + ++MI ++++GTGKT AF + ++ ++
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEG--RDMIGRARTGTGKTLAFGIPIIDKI 166
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +2
Query: 305 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 484
L + P ++K + G IQ+ L + ++MI ++++GTGKT AF + ++ ++
Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEG--RDMIGRARTGTGKTLAFGIPIIDKI 178
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +2
Query: 293 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 466
TF++L L + MGF ++IQ ++ LL ++++ +++G+GKT AF++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEG--KDVLGAARTGSGKTLAFLI 145
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKIT--DHILIGTPGKMFD 684
PT ELAIQT VA ++ K + +I +++I TPG++ D
Sbjct: 169 PTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLD 224
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +1
Query: 523 PTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELPRGSKITD----HILIGTPGKMFDWG 690
PT EL+ Q VA + V G E+ KI + ++LIGTPG++ D
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIM 157
Query: 691 VKFGMFDMGKIKV 729
+ + D +++
Sbjct: 158 ERMEILDFRNLEI 170
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 31.5 bits (68), Expect = 0.63
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Frame = +2
Query: 413 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNYPQYCVLVPHMN*PYKLVKLLQKWQNFVLK* 592
++I Q++SG GKTA FVL+ L +++ + VL Y++ ++ ++
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 593 S*SMQLEGKNF---PGVQKSQITFLLVLQERCLIGVSSLACLIWVKLKFFVLDE 745
S+ G N + K++ ++V ++ ++ L ++ F+LDE
Sbjct: 62 KVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDE 115
>At5g15570.1 68418.m01823 expressed protein hypothetical protein
F14P3.19 - Arabidopsis thaliana, EMBL:AC009755
Length = 381
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 362 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSN 493
S QETAL TL +++ Q GKTA F + M RV+SN
Sbjct: 61 SSFQETALETLT-----DVVIQYIQNIGKTAQFYVNMAGRVESN 99
>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
[Arabidopsis thaliana] GI:6491702; similar to myosin
GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
profiles: PF00063: myosin head (motor domain), PF00612:
IQ calmodulin-binding motif; identical to cDNA myosin
(ATM) GI:297068
Length = 1166
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 275 PLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP-QNMIAQSQSGTGKT 451
PLY + EA K N VYA I +TA+ ++ D Q++I +SG GKT
Sbjct: 212 PLYGNRYIEAYRKKSNESPHVYA--------IADTAIREMIRDEVNQSIIISGESGAGKT 263
Query: 452 AAFVLAM 472
+AM
Sbjct: 264 ETAKIAM 270
>At1g50360.1 68414.m05645 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1153
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 275 PLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP-QNMIAQSQSGTGKT 451
PLY + EA + N VYA I +TA+ ++ D Q++I +SG GKT
Sbjct: 204 PLYGNRNIEAYRKRSNESPHVYA--------IADTAIREMIRDEVNQSIIISGESGAGKT 255
Query: 452 AAFVLAM 472
+AM
Sbjct: 256 ETAKIAM 262
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/34 (35%), Positives = 25/34 (73%)
Frame = +2
Query: 380 ALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR 481
A+P L ++++A + +G+GKTA+F++ ++SR
Sbjct: 3 AIPAALTG--KSLLASADTGSGKTASFLVPIISR 34
>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains pfam domains PF00139:
Legume lectins beta domain and PF00069: Protein kinase
domain
Length = 523
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 177 GYQVHHQNLFLDYVFYPSPALQLYL 103
GY H +NL+L Y F P+ +L YL
Sbjct: 397 GYCKHKENLYLVYDFMPNGSLDKYL 421
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +3
Query: 69 QWGQKAEELEISNKVAGLGLDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLDI 248
+WG K EEL + G+ +N + D D P D S + +++ V S+
Sbjct: 501 EWGMKGEELNKMRRSVSFGIHGNNNNNA-ARDYRDEP---DVSWVNSLVKDSTVVSERSF 556
Query: 249 EIREKTLI 272
+ E+ I
Sbjct: 557 GMNERVRI 564
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
helicase, putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/83 (27%), Positives = 40/83 (48%)
Frame = +2
Query: 251 NKRKDPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQS 430
+K+ D N L VK E KG+ + SK+ +TAL +N++ +
Sbjct: 476 SKKVDRNEKL--VKITEMPDWAQPAFKGMQQLN-RVQSKVYDTAL-----FKAENILLCA 527
Query: 431 QSGTGKTAAFVLAMLSRVDSNKN 499
+G GKT +L +L +++ N+N
Sbjct: 528 PTGAGKTNVAMLTILQQLEMNRN 550
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,359,111
Number of Sequences: 28952
Number of extensions: 336201
Number of successful extensions: 969
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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