Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0705
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   2.4  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   4.1  
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    25   5.5  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     25   7.2  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   7.2  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   9.5  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   9.5  

>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 368 GWGNTILFVYLIYSNRPRIPFK-MYIH 445
           GW  ++L  Y  Y ++P  PF  ++ H
Sbjct: 589 GWFQSLLLTYTAYQSKPEAPFSTLFTH 615


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 21  PATVIVPTNTVAIWQSEIRLVYNMLNFIL*LF*IKPYTILRTFREGQEGT 170
           P  V+VP +TV  WQ  + L  + +N I  L       ++R +    +GT
Sbjct: 426 PFLVVVPLSTVPAWQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGT 475


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 522 YDYPQWHHVLQLLYKRGY 469
           Y  P  H V +L+YKRG+
Sbjct: 142 YGIPNLHSVRELIYKRGF 159


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 360 QEILQFNKSRKIMTISPPCHRA 295
           Q++L F+K  K +T+ PP  RA
Sbjct: 307 QKLLGFSKDEKAITVFPPRKRA 328


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 21  PATVIVPTNTVAIWQSEIR 77
           P  VIVP  TVA W+ E++
Sbjct: 606 PVLVIVPHATVANWERELK 624


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 205 WLAPCRGGLKLQVPSWPSRNVLSIV*G 125
           W+  C     +++ +W SRN ++I+ G
Sbjct: 109 WILSCSDDQTIRIWNWQSRNCIAILTG 135


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 299 GHCMSNVCVHNNNNKASITLLLLTLMC 219
           G+C   + +H NN + +   LL TL+C
Sbjct: 376 GYCYDYLFMHCNNGEKTSLHLLRTLIC 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,567
Number of Sequences: 5004
Number of extensions: 43678
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)