Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0705
         (542 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)                       28   5.7  
SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)         28   5.7  
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        28   5.7  
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1074

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 391 RLFDLF*SPTNTVQNVHTLIGDVSILITSFV*QLQ 495
           R  D+  SP N +  V +L+GDV    TS + +LQ
Sbjct: 680 RSSDVAQSPNNIISTVQSLLGDVQSTDTSIMSELQ 714


>SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)
          Length = 444

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 275 VHNNNNKASITLLLLTLMCSYRLLASTVSGRPKAS 171
           +H N   A +TL + T++ +  L +ST    PK S
Sbjct: 269 IHRNAGPARVTLSITTILTTILLTSSTNGSMPKVS 303


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 21  PATVIVPTNTVAIWQSEIRLVYNMLNFIL 107
           P  V+VP +T+A WQ E  +  + LN ++
Sbjct: 178 PFIVVVPLSTMAAWQREFVIWADQLNVVV 206


>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 537 LSALHYDYPQWHHVLQLLYKRGYQY*YISDKC-MY 436
           L  +H     WH  ++LL+KR Y      D C MY
Sbjct: 564 LEGMHLQIGDWHTAVKLLFKRFYSAQSDGDLCTMY 598


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,763,243
Number of Sequences: 59808
Number of extensions: 338694
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)