Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0705
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine re...    30   0.94 
Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>AF022983-1|AAB69946.2|  324|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 16 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 248 LKLYYCCCVHIHCSCNARWHGGLMVIIFRDLLNCK 352
           +  ++C C+ IHC      HG  + + F D+  C+
Sbjct: 55  ISAFHCLCLMIHCIARVFQHGADLFLYFSDIPICE 89


>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 415 AIRINQINE*NSIAPSTFSRNFAIQQVPKNNDH*STVPP 299
           A+ +N  +  NS+ PST  RN  + + P +    S  PP
Sbjct: 623 AVNLNAPSTSNSMQPSTQERNLVVDEFPTDRSGPSQAPP 661


>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 415 AIRINQINE*NSIAPSTFSRNFAIQQVPKNNDH*STVPP 299
           A+ +N  +  NS+ PST  RN  + + P +    S  PP
Sbjct: 623 AVNLNAPSTSNSMQPSTQERNLVVDEFPTDRSGPSQAPP 661


>Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical
           protein T10H4.10 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 278 CVHNNNNKASITLLLLTLMCSYRLLASTVSGRPKASGAFLALTECPEYRVRF 123
           C+  +  KA + L+L  L+  Y L       + K    F  L + PE+R+RF
Sbjct: 447 CLGESLAKAELYLVLGNLLLDYDLEPVGEIPKLKTLAPFGLLKQSPEFRIRF 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,432,545
Number of Sequences: 27780
Number of extensions: 258831
Number of successful extensions: 481
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)