Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0703
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   2.6  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   4.5  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    26   5.9  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    25   7.9  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 660 KQILNFVDQPLLIIFDYH*NT 598
           KQIL+ V+Q  L+IFD H  T
Sbjct: 717 KQILHLVEQNCLLIFDLHNGT 737


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -3

Query: 455 YPIVGRPNYIPCHVSPIYSDMKMNRADTLLEISIKYIFLE 336
           +  VG+ + +P H++P Y++   N + +L E  + Y F +
Sbjct: 130 FDAVGQQSSVPIHINPAYTNSHQN-SYSLNETYLSYDFFD 168


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 452 PIVGRPNYIPCHVSPIYSDMKMN 384
           PIVG P  +P + SP+Y D++ N
Sbjct: 70  PIVG-PAALPVYPSPLYRDLQTN 91


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 467 QNLPYPIVGRPNYIPCHVSPIYSDMKMNRA 378
           + + +P    PN +  H+SP+ SD + N A
Sbjct: 75  KGIAFPTAVSPNDMAAHLSPLKSDPEANLA 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,594
Number of Sequences: 5004
Number of extensions: 48464
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)