Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0703
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_53172| Best HMM Match : ABC_tran (HMM E-Value=5.4e-40)              30   1.5  
SB_56049| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)              28   8.3  

>SB_28258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -3

Query: 599 RRKVYKCGFLFMIVKNKTPHLDVATHIKHATFSSFFSPKVGR 474
           RR+V + G LF  + ++  H++ A+ +  ++F + + P VGR
Sbjct: 126 RREVKRYGVLFTCMASRAVHIETASSLDTSSFLNAYRPFVGR 167


>SB_53172| Best HMM Match : ABC_tran (HMM E-Value=5.4e-40)
          Length = 665

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -3

Query: 629 Y*SYLITTKTRRKVYKCGFLFMIVKNKTP-HLDVATHIKHATFSSFFSPKVGRVVQNLPY 453
           Y S  I     R ++     F  +K  T  H  +A  + HA  S F +  VGR++     
Sbjct: 503 YISLTIAANVLRYLFSFFIFFTALKCNTKLHNTMAQSLIHAPVSFFDTNPVGRILNRFSA 562

Query: 452 PIVGRPNYIPCHV 414
            IV   N +P H+
Sbjct: 563 DIVEIDNILPPHL 575


>SB_56049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 145 LCLLVLFMNCCHFYTYFFFSFQCCNVLKLKHH 240
           L + +LF  C  F T F FS +C N L L +H
Sbjct: 12  LFITILFPRCS-FTTLFHFSAECQNALTLDYH 42


>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -3

Query: 599 RRKVYKCGFLFMIVKNKTPHLDVATHIKHATFSSFFSPKVGR 474
           RR+V + G LF  + ++  H++ A+ +  ++F + +   VGR
Sbjct: 590 RREVKRYGVLFTCMASRDVHIETASSLDTSSFLNVYRSFVGR 631


>SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
          Length = 991

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 533 VATHIKHATFSSFFSPKVGRVVQNLPYPIVGRPNYIPCHVSPIYSDMKMNRA-DTLLEIS 357
           +A HIKHA     F P+    ++    P+    +     ++P+ + ++++ A D      
Sbjct: 561 IAEHIKHAIAEQVFDPRSKVALRRARAPVESTAS----EITPLLTQLEIHVAEDKSFTTR 616

Query: 356 IKYIFLE 336
           ++YIF E
Sbjct: 617 VRYIFKE 623


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,925,115
Number of Sequences: 59808
Number of extensions: 325036
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)