Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0702
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   4.0  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.0  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   5.3  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   5.3  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   7.0  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 248 WVYAHEKSGLSVIRFN 201
           W+Y + KSG + IRFN
Sbjct: 74  WIYKYTKSGRTSIRFN 89


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -1

Query: 162 SLLLIILTEIH-RL-LMXVFVVLQSLHYANGGCMMILWGAIIFLRLLVFY-C-PLISC 1
           S+L   L+E++ RL L  V +V+  +    GGC   +W  +IF     F+ C P+ +C
Sbjct: 161 SVLFAPLSEVYGRLPLYSVTLVIFVVFQIGGGCSKNIWSLVIFRFFHGFFGCTPMSAC 218


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 64   HHAPTIRIME*LEHYKNXHQ 123
            HH PT RI + +EH  N  Q
Sbjct: 1350 HHRPTYRIAKIMEHLGNVQQ 1369


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 65  IMHPPFA*WSDWSTTKTXINSRWISVKIINSSEATIVKDT*IKFIN 202
           +M+P F   +DW      I+++ I V     S+AT   DT   F N
Sbjct: 345 VMNPAFTHHADWWDVLCDIDNQTIQVSSNLFSDATTTMDTKSLFNN 390


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 187 LCVLNNGSFTTINY 146
           LCVL NGS  T NY
Sbjct: 82  LCVLENGSVLTANY 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,675
Number of Sequences: 5004
Number of extensions: 43141
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)