Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0702
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117,438...    28   4.0  
01_03_0204 + 13771346-13772680                                         28   4.0  
01_01_0350 + 2782189-2782650,2783778-2783798,2787172-2787690,278...    28   4.0  
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794...    28   5.3  
05_05_0370 + 24466565-24468031                                         27   7.1  
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771...    27   9.3  

>03_01_0594 -
           4385291-4385503,4385647-4385829,4385944-4386117,
           4386213-4386373,4386470-4386551,4386626-4386658,
           4386755-4387161,4387237-4387381,4387483-4387587,
           4387704-4387826,4387908-4388027,4388118-4388237,
           4388569-4388775,4388857-4389036,4389151-4389285,
           4389382-4389519,4389630-4389728,4389832-4389951,
           4390029-4390091
          Length = 935

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 156 LLIILTEIHRLLMXVFVVLQSLHYANGGCMMILWGAIIFLRLLVFYCPL 10
           LLI    + +L+  +  V  ++ +A+   +   W  +I+L  LVFY PL
Sbjct: 794 LLICAFILAQLVATLIAVYATISFASISAIGWGWAGVIWLYSLVFYAPL 842


>01_03_0204 + 13771346-13772680
          Length = 444

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -3

Query: 238 PTKSRGYQL-YDLIDEFDLCVLNNGSFTTINYLNRNPSAIDXSFCSAPITPLCEWWVHDD 62
           P  S+ Y    D+I+  D C  NN S    N  N  PS     F    +   C  ++H  
Sbjct: 260 PPNSQSYNCTMDIINSNDACGSNNSSVIVANQANIAPSG---HFYPIALQSSCSTFLH-- 314

Query: 61  SMGSYHFPTLTRVLLSVDL 5
              S +  T+T +L  VD+
Sbjct: 315 ---SNNNDTITAILEGVDI 330


>01_01_0350 +
           2782189-2782650,2783778-2783798,2787172-2787690,
           2787780-2788015,2788110-2788242,2788482-2788547,
           2789200-2789454
          Length = 563

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 312 IIRDLPKPIYVAGDFNAHHGHLGVC--PRKVG 223
           I++DL  P+  AGD N  HG L     PRK G
Sbjct: 527 IVQDLLTPVAAAGDENVFHGMLTAVSDPRKDG 558


>01_06_1257 -
           35778078-35778299,35778952-35779069,35779294-35779433,
           35779763-35779864,35779971-35780051,35780333-35780402,
           35781053-35781114,35781789-35782183,35782303-35782386,
           35782949-35783041,35783144-35783195,35783310-35783376,
           35783492-35783550,35784209-35784256,35784927-35785040,
           35785162-35785335,35785417-35785944,35786025-35786094,
           35786668-35786711
          Length = 840

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 261 HHGHLGVCPRKVGVISYTI*LMNLIYVSLTMVASLLLIILTE 136
           H+  +G C RK   + Y I L+N+ + ++   A LLL+++ E
Sbjct: 302 HNPSVGYCQRKYSSL-YMI-LLNVFFKAMNFFAGLLLLLMPE 341


>05_05_0370 + 24466565-24468031
          Length = 488

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -3

Query: 250 FGCMPTKSRGYQLYDLIDEFDLCVLNNGSFTTINYLNRNPSAIDXSFCSAPITPLCEWWV 71
           F C     RGY +  L       V N G  + I++L+  PS      C     P+ E  +
Sbjct: 239 FVCNGFAKRGYHVGPLCLPKPPAVGNVGEPSCISWLDSKPSRSVVYICFGTFAPVSEEQL 298

Query: 70  HDDSMG 53
           H+ ++G
Sbjct: 299 HELALG 304


>03_02_0348 +
           7709894-7709926,7710516-7710604,7711202-7711277,
           7712019-7712214,7712449-7712832,7712884-7714804,
           7714906-7714966,7715952-7716371
          Length = 1059

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 354 PPSNGSFRISKLRNIIRDLPKPIYVAGDFNAHHGHL 247
           P +N    +  +RNI++D+      + D   HHG +
Sbjct: 582 PQNNAGNILDSIRNILKDIEDEADSSNDSKTHHGDM 617


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,035,569
Number of Sequences: 37544
Number of extensions: 265465
Number of successful extensions: 530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)