Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0702
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    35   0.031
Z29117-7|CAA82379.1|  159|Caenorhabditis elegans Hypothetical pr...    31   0.51 
AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z81537-2|CAB04373.1|  682|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AL034391-1|CAA22302.2|  333|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z81140-1|CAB03484.1|   85|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AL021497-6|CAA16408.1|  141|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain (...    28   4.8  
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z22176-3|CAA80132.1|  305|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   6.3  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical...    27   6.3  
AL023845-7|CAA19542.1|  381|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y113G7B.12 protein.
          Length = 1042

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
 Frame = -1

Query: 507 NAQNEHGGVAILINP---YFKYNIIQTGFYQDIQTVALSLYV-----SGNHLTILCVYCP 352
           + +N  GGVAIL  P     K +I Q   Y   Q+  L+  V      G    ++ VY P
Sbjct: 434 HTKNSGGGVAILFKPPLVVTKLDIQQEHHYNGHQSEVLACRVLNPDYPGASFNLVVVYRP 493

Query: 351 PSNGSFRISKL-RNIIRDLPKPIYV-AGDFN 265
           P NG  +IS+L  ++   LP   YV  GDFN
Sbjct: 494 PING--KISQLIAHLSSFLPSSEYVLMGDFN 522


>Z29117-7|CAA82379.1|  159|Caenorhabditis elegans Hypothetical
           protein C48B4.7 protein.
          Length = 159

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 222 VISYTI*LMNLIYVSLTMVASLLLIILT-EIHRLLMXVFVVLQSLHYANGGCMMILWGAI 46
           VI + +   N     +  VA +LL++ T       +  +  + ++HY    C++++W A+
Sbjct: 36  VIQFCMLYYNGNQEEIVFVAMVLLLVFTISSFVAFLGEYGTMMAIHYYVS-CILLIWPAV 94

Query: 45  IFLRLLVFYC 16
           +F+  L+  C
Sbjct: 95  VFIMKLISLC 104


>AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.7 protein.
          Length = 574

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 516 PLPNAQNEHGGVAILINPYFKYNI 445
           P P AQ  +G + +L NPYF  N+
Sbjct: 37  PPPQAQRSNGWLNVLANPYFSRNV 60


>Z81537-2|CAB04373.1|  682|Caenorhabditis elegans Hypothetical
           protein F41D3.2 protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 501 QNEHGGVAILINPYFKYNIIQTGFYQDIQTVALSLYVSGNHLT 373
           + + GG  IL++    +   Q+GFY+       S Y SG HLT
Sbjct: 622 EKDCGGKCILVDYKPTFFNPQSGFYRMFDDRGFSYYTSGLHLT 664


>AL034391-1|CAA22302.2|  333|Caenorhabditis elegans Hypothetical
           protein Y40H4A.2 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 393 VSGNHLTILCVYCPPSNGSFRISKLRNIIRDLPKPIYVAGDFNAHHGHL 247
           VS   + I+  Y   S GSF  S L  +  D   P+++ GD + H G L
Sbjct: 48  VSKEEIRIISNYAAASFGSF--STLMRVDEDC-LPVHIVGDLHGHFGDL 93


>Z81140-1|CAB03484.1|   85|Caenorhabditis elegans Hypothetical
           protein W10G6.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = -1

Query: 516 PLPNAQNEHGGVAILINPYFKYNIIQTGFYQDIQTVALSLYVSGNHLTILCVYCPPSNGS 337
           P P  + + GG    +N   +  +   GF+QD  ++ LS +      T  C+    S  +
Sbjct: 2   PTPARKTQKGGRKRRVNGVEEEILYIIGFFQDDSSIGLSTF-----FTKFCILYQDSKSN 56

Query: 336 FRISKL 319
           FR+  L
Sbjct: 57  FRVLNL 62


>AL021497-6|CAA16408.1|  141|Caenorhabditis elegans Hypothetical
           protein Y51A2D.10 protein.
          Length = 141

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = -1

Query: 426 QDIQTVALSLYVSGN-HLTILCVYCPPSNGSFRISKLRNIIRDLPKPIYVAGDFNAHHGH 250
           Q ++ V + LY  G  + T + V    ++G+F++   +N IR +   I +    N    H
Sbjct: 39  QAVKDVKIKLYEDGTVYDTKMDVTNTLADGTFKVVGGQNKIRKIDPKINIYHRCN----H 94

Query: 249 LGVCPRKVGV 220
           +G+CP++V +
Sbjct: 95  VGLCPKRVTI 104


>AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform b protein.
          Length = 853

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 205 LIDEFDLCVLNNGSFTTINYLNRN 134
           L++E DLCVL+NG    I++  R+
Sbjct: 55  LVEECDLCVLDNGRIFYIHHTTRS 78


>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical
           protein Y6B3B.1 protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 193 IHQLNRITDNPDFSWAYTQMPMVSVEISSHIYWLRQ--ISNYITQFTYSEATI 345
           I  L  + D PD +W+   + +V  EI+  + W RQ  IS  + +  Y    I
Sbjct: 265 ILHLKVLKDFPDTAWSNRHVTLVLHEIARQLPWARQEAISKLLERLGYDARRI 317


>Z22176-3|CAA80132.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1098.4 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 378 SGYHLHITIM-PQSECPGKILFE 443
           SGYHLH+ +   Q +  GK++FE
Sbjct: 148 SGYHLHVWVTESQPDASGKLVFE 170


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 333 RISKLRNIIRDLPKPIY 283
           R+ KLRN++R LP+P Y
Sbjct: 896 RLHKLRNLLRKLPRPHY 912


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 333 RISKLRNIIRDLPKPIY 283
           R+ KLRN++R LP+P Y
Sbjct: 774 RLHKLRNLLRKLPRPHY 790


>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
           protein Y6B3B.1 protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 193 IHQLNRITDNPDFSWAYTQMPMVSVEISSHIYWLRQ--ISNYITQFTYSEATI 345
           I  L  + D PD +W+   + +V  EI+  + W RQ  IS  + +  Y    I
Sbjct: 265 ILHLKVLKDFPDTAWSNRHVTLVLHEIARQLPWARQEAISKLLERLGYDARRI 317


>AL023845-7|CAA19542.1|  381|Caenorhabditis elegans Hypothetical
           protein Y51B9A.9 protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 184 IDQIHQLNRITDNPDFSWAYTQMP 255
           IDQ  Q+ R   NPD S+ Y QMP
Sbjct: 228 IDQFFQIVRFLGNPDLSF-YMQMP 250


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 363 VYCPPSNGSFRISKLR----NIIRDLPKPIYVAGDFNAHH 256
           VY PP + S   ++L     NI +   K I ++GD NAHH
Sbjct: 6   VYVPPRSSSSNHARLMTDFSNIFQTKSKSI-ISGDVNAHH 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,104,367
Number of Sequences: 27780
Number of extensions: 238687
Number of successful extensions: 565
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)