Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0701
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    85   1e-17
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   7.8  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   7.8  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   7.8  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   7.8  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 36/72 (50%), Positives = 48/72 (66%)
 Frame = +1

Query: 310 RTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDWARDHR 489
           +T IFAI  Y  SGLGITAG HRLW+H++YKA+ PL   L      AF+ ++  W+RDHR
Sbjct: 89  KTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHR 148

Query: 490 MHHKYSGPMRTP 525
            HH+Y+   + P
Sbjct: 149 AHHRYTDTDKDP 160



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 18/53 (33%), Positives = 36/53 (67%)
 Frame = +3

Query: 510 TDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLRNDPILRFQKKYY 668
           TD DP+N  +GF+++H+GW+++ ++P    +    DV+DL +DP + F  +++
Sbjct: 156 TDKDPYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDLNSDPFVMFNHRHF 205


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 289 TSTLHKHHRHADKEQNHISPHNLPRS 212
           +S+ + HHR AD +     P N+P S
Sbjct: 121 SSSNYAHHRSADSQTKSALPPNVPAS 146


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 249 SLSACRWCLWRVLVPFQSHVEDFYIRH 329
           +L  CR CL  +  P +S +E++ ++H
Sbjct: 101 TLFKCRVCLTNIGQPERSRIENYVLKH 127


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 116 QRKQEASWVLYEADANNLPEDAPPHVPPSAEKRPWKI-VWRN 238
           QR+ E+++ L E D     E +    PP + K P  +  W N
Sbjct: 11  QRRDESAYRLGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSN 52


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 274 KHHRHADKEQNHISPHNLPRS 212
           +HHRH    Q   S H++PR+
Sbjct: 317 QHHRHPFARQPDYSAHSIPRT 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,542
Number of Sequences: 5004
Number of extensions: 74717
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)