Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0701
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0002 - 15280292-15281550,15282714-15282840 32 0.49
05_05_0017 + 21546434-21546841 31 0.86
11_01_0535 + 4234282-4235082 30 1.5
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 29 2.6
10_08_0445 + 17989438-17990895 29 2.6
07_03_1782 + 29477748-29478169,29478257-29478413,29478518-294786... 29 2.6
07_03_0926 - 22639775-22640779 29 2.6
11_06_0330 - 22401751-22402221 29 3.5
05_07_0334 - 29358823-29360247 29 3.5
11_01_0043 + 328272-328753,329233-329298,330082-330253,330357-33... 28 6.1
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 28 8.0
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 185 PHVPPSAEKRP---WKIVWRNVILFFICMSVVFMEGTCSF 295
P PP A++RP + +WR V+L C+S+V CS+
Sbjct: 140 PPAPPGAKRRPVRPLRSLWRVVLLCTECLSLVRSAAVCSY 179
>05_05_0017 + 21546434-21546841
Length = 135
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = +1
Query: 445 IAFQDAVVDWARDHRMHHKYSGPMRTPTTQPEDSSFPTLAGCC*GSIPKSKPKAIPS 615
+A A VDWAR R HH S P P S P L C P P + P+
Sbjct: 28 LAVPAAEVDWARQLRHHHGASPASDAPAPSPAPLSTPEL---CRPGEPVPAPSSSPA 81
>11_01_0535 + 4234282-4235082
Length = 266
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 307 WRTSIFAIFLYLCSGLGITAGAHRLWAHKSYKARLP 414
W + +A FLY C LG A RLW + + P
Sbjct: 220 WTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYP 255
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 327 HIFVLVFGIGYHSWRAQT-LGTQVL*SSAATENITHHIQYYRFSGCRSG 470
H+F F Y+ W + + G ++ A ENI + QY RF G ++G
Sbjct: 57 HLFESGFMPSYNCWTSHSEQGVEMEEDEAQDENIPNWAQYARFEGNQTG 105
>10_08_0445 + 17989438-17990895
Length = 485
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +2
Query: 152 ADANNL-PEDAPPHV--PPSAEKRPWK 223
A A N+ P +PPHV PP+ +RPW+
Sbjct: 407 ATATNMTPPPSPPHVRAPPAPARRPWR 433
>07_03_1782 +
29477748-29478169,29478257-29478413,29478518-29478610,
29478753-29478938,29479107-29479187,29479788-29479925,
29480044-29480208
Length = 413
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -1
Query: 283 TLHKHHRHADKEQN-HISPHNLPRSLLC*GRYMGRCIFWQVIGVGFVQYPRSLLFPLGRH 107
T H++H H DK+++ H P L RSL R + I + ++ F + RS G H
Sbjct: 177 THHQNHGHVDKDESWHPLPERLYRSLNRATRMLRFSIPFPMLAYPFYLWSRS-PGKSGSH 235
Query: 106 FH 101
FH
Sbjct: 236 FH 237
>07_03_0926 - 22639775-22640779
Length = 334
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 467 WIGPVIIACTTNIQDRCGPPQRNPRILLF 553
W G V++A I DR PP P+IL F
Sbjct: 162 WAGAVLVAPMCKISDRIRPPWPLPQILTF 190
>11_06_0330 - 22401751-22402221
Length = 156
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 508 GPMRTPTTQPEDSSFPTLAGCC*GSIPKSKPKA--IPST*MICAMILS 645
GP T T P D++ PTLA + + KP A +P A ILS
Sbjct: 8 GPTTTTTMDPNDAAVPTLAAAAVAAGDEKKPPAGKVPMPDDYIATILS 55
>05_07_0334 - 29358823-29360247
Length = 474
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 525 GGPHRS*IFVVHAMITGPIHYGILKSDSIEYGE*YSQWQPSFIGLVCP 382
GG ++S + V A +G I G+L SD Y S + S G CP
Sbjct: 190 GGGYKSLVVYVEACESGSIFEGLLPSDISVYATTASNAEESSWGTYCP 237
>11_01_0043 +
328272-328753,329233-329298,330082-330253,330357-330565,
330779-330937,331279-331627
Length = 478
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -2
Query: 411 QPSFIGLVCPKSV-RASCDTQSRTQVQKYGEYRSPPHGFEKEQVPSIN 271
+P + GL C +CD R KY +R PHG +VP N
Sbjct: 120 RPLYSGLKCSFIFDEVACDKYGRNDT-KYQHWRWQPHGCNLPRVPGAN 166
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 83 NQYIVSVKMPPQRKQEASWVLYEADA--NNLPEDAPPHVPPSAEK 211
+Q +VS+ +++ E + Y+ D + + D+ PH+PPSA++
Sbjct: 437 HQTVVSLPPAVEQRDEDLQLQYDTDFWDDGMEVDSRPHLPPSAKR 481
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,539,043
Number of Sequences: 37544
Number of extensions: 517817
Number of successful extensions: 1531
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1531
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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