Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0700
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    29   0.48 
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    29   0.64 
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    29   0.84 
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    28   1.1  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.9  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   1.9  

>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 29  LRYAAGLRRAVTRHVWRDHRRYACVWCSVYT 121
           +RY A LRR V +   + H RY C +C   T
Sbjct: 16  VRYGASLRRDVRKIEVQQHSRYQCPFCGRLT 46


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 29  LRYAAGLRRAVTRHVWRDHRRYACVWC 109
           +RY A LRR V +   + H RY C +C
Sbjct: 16  VRYGASLRRDVRKIEVQQHSRYQCPFC 42


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 562 PAPGHLSPKSVLVSKHNAYRSFERGPYQN*VD 467
           P+P H SPK  L++K N+Y  F+  P  N VD
Sbjct: 353 PSP-HASPKDSLINKSNSY-FFQNPPKSNSVD 382


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +3

Query: 81   ITAV--TRVSGALCT-LNSVLTFVMIMYVY*VVQFLFSIRILTTQPVPDQLSR 230
            ITAV  T +S    T  +SVLT V +++V  ++  L ++ + T  P P+ L R
Sbjct: 948  ITAVFLTIISAVASTDQSSVLTAVQLLWVNLIMDTLAALALATDPPTPEVLKR 1000


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 133 STEFSVHRAPDTRVTAVIPPNVSCYGTP 50
           S+ ++ HR+ D++  + +PPNV    +P
Sbjct: 122 SSNYAHHRSADSQTKSALPPNVPASSSP 149


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 121 SVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQA 11
           ++H  P ++  +VIPPN S  G+   S   +  N  A
Sbjct: 327 TIHYTPSSKRISVIPPNTSNIGSRVVSRSGQNNNQPA 363


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 142 TKVSTEFSVHRAPDTRVTAVIPPNVSCYGTP*TSSVSEGTNSQASVS 2
           +  STE S H    T +T+++PP  + + +  T++V   T+   + +
Sbjct: 50  SSASTETSTHSVTSTNITSIVPPPSTSHNST-TTTVPPTTSMNTTTT 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,136
Number of Sequences: 5004
Number of extensions: 54330
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)