Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0700
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0480 - 3676529-3676687,3676767-3676931,3677044-3677220,367...    29   2.6  
10_08_0427 + 17828007-17828570,17829788-17829904,17830319-178303...    29   4.6  
06_03_1061 + 27282979-27286854                                         29   4.6  
08_02_0724 + 20439312-20439523,20441282-20441345                       28   6.1  
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539     28   8.1  
06_01_0886 - 6801333-6802886                                           28   8.1  

>03_01_0480 -
           3676529-3676687,3676767-3676931,3677044-3677220,
           3678170-3678273,3678700-3678843,3679831-3679898,
           3680059-3680162,3680759-3680767,3681572-3681657,
           3681918-3683373
          Length = 823

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 502 NGKHYACLLKQIWVKGVLEQAMSYIMFFKC 591
           N KHY C++  +   G+L++A  +I   KC
Sbjct: 383 NIKHYGCMVDMLGRAGLLKEAFEFIDTMKC 412


>10_08_0427 +
           17828007-17828570,17829788-17829904,17830319-17830384,
           17831466-17831572,17831939-17832017,17832861-17833574,
           17834040-17834148,17834263-17834429,17834876-17834950,
           17835025-17835117,17835202-17835294
          Length = 727

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 239 MKVVSYNCRLGPVWSGYRYHS--VQQNYYGVTHY 334
           +K+V  N +L  +  G + H+  VQQ  YGVTH+
Sbjct: 539 VKLVGSNRKLSVLQLGIKQHNNKVQQKLYGVTHF 572


>06_03_1061 + 27282979-27286854
          Length = 1291

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +1

Query: 382 LPAGLPPEPRLWTREDVSVFLKWCEREFDLPNFDMDLFQMNGKHYACLLKQI 537
           +PA L   P    R      L+    + D PNFD D      K  +C L+QI
Sbjct: 121 VPAPLLSNPFKRARTGADEALQGQGADTDTPNFDQDAMSSKIKSISCCLEQI 172


>08_02_0724 + 20439312-20439523,20441282-20441345
          Length = 91

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 276 YGAATATIQSNRTIMALPTTLGATASFTAW*HQGATASRSSARTKTMD 419
           Y   +A  +SN T + LPT    ++S T W  +   ASR +A  K  D
Sbjct: 14  YSTTSAVRRSNPTEVHLPTRSKPSSSSTTWSIEIIQASRYAAYQKMSD 61


>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
          Length = 1908

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 2    RNARLRVRSLRYAAGLRRAVTRHVW 76
            R  R  +R+ RY   LRR   RHVW
Sbjct: 1812 RRRRAALRAARYQQSLRRYHQRHVW 1836


>06_01_0886 - 6801333-6802886
          Length = 517

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +1

Query: 502 NGKHYACLLKQIWVKGVLEQAMSYIMFFKC 591
           N +HY+C++  +   G+L++A + +   +C
Sbjct: 400 NARHYSCIVDMLGRAGLLDEAYAIVSNMRC 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,103,242
Number of Sequences: 37544
Number of extensions: 390933
Number of successful extensions: 1173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)