Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0700
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)               51   1e-06
SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          42   6e-04
SB_27901| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)                  29   3.6  
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)              29   4.7  
SB_31461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_41708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_56719| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2)             28   8.3  
SB_24898| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_35476| Best HMM Match : zf-C2H2 (HMM E-Value=4.3)                   28   8.3  

>SB_28407| Best HMM Match : SAM_PNT (HMM E-Value=3.4e-13)
          Length = 233

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = +1

Query: 403 EPRLWTREDVSVFLKWCEREFDLPNFDMDLFQMNGKHYACLL 528
           +PRLWTREDV+ +L+W    + L N  +D F+MNGK   CL+
Sbjct: 163 DPRLWTREDVTSWLRWISEAYSLENVKLDRFEMNGK-ALCLM 203


>SB_33428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = +1

Query: 394 LPPEPRLWTREDVSVFLKWCEREFDLPNFDMDLFQMNGKHYACLL 528
           +PP+PRLW++ DV  +LKW    +++ +   D F MNGK   C+L
Sbjct: 118 VPPDPRLWSKWDVLEWLKWATERYNVKDVAADKFLMNGKG-ICML 161


>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +1

Query: 394 LPPEPRLWTREDVSVFLKWCEREFDLPNFDMDLFQMNGKHYACLLKQIWVK 546
           +P +P  WT+E V  ++ W  +EF L + D+D F ++G+    L +  ++K
Sbjct: 161 VPADPLCWTKEHVRQWILWAIKEFSLKDIDIDRFNIDGRDLCRLTRDDFMK 211


>SB_27901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 263 RLGPVWSGYRYHSVQQNYYGVTHYPGRH 346
           RL P    +R+H++Q NY     + GRH
Sbjct: 43  RLPPTSDAFRFHAMQSNYVAKPIFRGRH 70


>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1098

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 263 RLGPVWSGYRYHSVQQNYYGVTHYPGRH 346
           RL P    +R+H++Q NY     + GRH
Sbjct: 260 RLPPTSDAFRFHAMQSNYVAKPIFRGRH 287


>SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)
          Length = 696

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 406 VLAEDRLAVAPWCHQAVKEAVAPRVV 329
           +L E    VA WC Q +K+ +A R++
Sbjct: 260 ILTEKSHGVASWCEQLIKDMLASRII 285


>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
          Length = 1043

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = +2

Query: 281 SGYRYHSVQQNYYGVTHYPGRHRLLHRL-VTPRRNCQ----PVFRQN--QDYGP 421
           S  R+   QQ   G  H PG+H +  R    P ++ Q    PV RQ+  QDY P
Sbjct: 785 SPQRHEEGQQQLPGGNHSPGQHHMQQRREALPEQHRQGRPIPVMRQHPRQDYSP 838


>SB_31461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 535 IWVKGVLEQAMSYIMFFKCLYATQRC 612
           IW+  +L Q M Y +   CLY TQ C
Sbjct: 18  IWIN-ILTQGMGYPILAGCLYFTQAC 42


>SB_41708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 50  RRAVTRHVWRDHRRYACVWCSVYTEFCANFCD 145
           RR   +H WR   +YA  W  V T   A  CD
Sbjct: 55  RRIAIKHYWRKQSQYAS-WMCVLTPLLAVSCD 85


>SB_56719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 275 VWSGYRYHSVQQNY-YGVTHYPGRHRLLHRLVTPRRNCQPVFRQNQDY 415
           VW   R    + N+ YG+ +  G  RLL + V  RR   P+F  N  Y
Sbjct: 4   VWVRTRPEEQKGNHTYGLPNRYGSTRLLRKAVKTRRPQAPIFPANMLY 51


>SB_52813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 11  RLRVRSLRYAAGLRRAVTRHVWRDHRRYACV 103
           RLR  S R + GL R+V  H  R+H+ +A V
Sbjct: 9   RLRGTSSRLSNGLSRSVREHCVREHQLFANV 39


>SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2)
          Length = 604

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 11  RLRVRSLRYAAGLRRAVTRHVWRDHRRYACV 103
           RLR  S R + GL R+V  H  R+H+ +A V
Sbjct: 280 RLRGTSSRLSNGLSRSVREHCVREHQLFANV 310


>SB_24898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +2

Query: 11  RLRVRSLRYAAGLRRAVTRHVWRDHRRYACVWCSVYTEFCANFCDDNVRVLSCPVSVFNK 190
           RLR  S R + GL R+V  H  R+H+ +A    +   EF  +      R  S PV V  +
Sbjct: 9   RLRGTSSRLSNGLSRSVREHCVREHQLFA----NGVREFREHMSHVRERYCSIPVRVLAR 64

Query: 191 D 193
           +
Sbjct: 65  N 65


>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +3

Query: 258 TAVWAQYGAATATIQSNRTIMALPTTLGATASFTAW*HQGATASRSSARTKTM 416
           TA       ATAT  +  T  A  TT  ATA+ T      A AS ++A T T+
Sbjct: 688 TATATVTATATATATATATATAATTTATATATATVTATVTAAASATAAVTATV 740


>SB_35476| Best HMM Match : zf-C2H2 (HMM E-Value=4.3)
          Length = 243

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
 Frame = -3

Query: 391 RLAVAPWCH----QAVKEAVAPRVVGNAIIVLLD*MVAVAAPYWAQTAVVAYNFHYVNRL 224
           R AV P CH       +       +  A I L + +  VA P WA T  ++      +R 
Sbjct: 23  RTAVCPICHVPNMNLRRHLKNVHDIDRASIRLKELLQQVAGPSWANTRYLSEEEKKPSRT 82

Query: 223 S*SGTGCVVKILIENRNWTTQYTYIIITKVSTEFSVHRA 107
           +     C    L+E+  ++T      +TK    FS   A
Sbjct: 83  ARLARPCKRPSLVESDQYSTSDEDFDVTKQPVSFSEDEA 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,580,441
Number of Sequences: 59808
Number of extensions: 451985
Number of successful extensions: 1593
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)