Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0700
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched relat...    29   3.2  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    28   5.5  
U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical p...    27   9.6  

>AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched related
           family protein12, isoform a protein.
          Length = 901

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +2

Query: 116 YTEFCANFCDDNVRVLSCPVSVFNKDFDNATSSGSA*PINVMKVVSYNCRLGPVWSGYRY 295
           Y EFC NFC  N   +    S +  + DN+ +       ++ + +S N  +  ++S  R 
Sbjct: 142 YQEFCTNFCQINEPFVQFARS-YLTELDNSKNG-----TDLSERISLNYPITSIYS--RK 193

Query: 296 HSVQQNYYGV 325
            S+Q N++G+
Sbjct: 194 MSIQPNFFGI 203


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
           potassium channelsprotein 2 protein.
          Length = 1564

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 651 ERWE*QVRKELYLTALRRVQAFEEHYVRH 565
           E W+  + KEL L + +  +AF+E YVR+
Sbjct: 15  EVWKEDIEKELMLYSEKLYKAFKEQYVRY 43


>U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical
           protein C18C4.9 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 41  AGLRRAVTRHVWRDHRRYAC 100
           AGLR A  +HVW    +Y C
Sbjct: 277 AGLREAGEKHVWPTRNQYGC 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,539,389
Number of Sequences: 27780
Number of extensions: 317291
Number of successful extensions: 878
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)