Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0700
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54290.1 68418.m06762 cytochrome c biogenesis protein family ...    31   0.96 
At3g18180.1 68416.m02313 hypothetical protein contains Pfam doma...    29   3.9  
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ...    28   5.1  
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...    28   5.1  
At5g15300.1 68418.m01792 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At4g34412.1 68417.m04888 expressed protein                             28   6.8  
At3g57190.1 68416.m06367 peptide chain release factor, putative ...    28   6.8  

>At5g54290.1 68418.m06762 cytochrome c biogenesis protein family low
           similarity to cytochrome c biogenesis protein CcdA
           [Paracoccus pantotrophus] GI:11095328; contains Pfam
           profile PF02683: Cytochrome C biogenesis protein
           transmembrane region
          Length = 354

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +3

Query: 165 VVQFLFSIRILTTQPVPDQLSRLT**KL*ATTAVWAQYGAATATIQSNRTIMALPTTLGA 344
           V  FL+S      + V DQLS L+       T++   +GA   T  S  T+  LP TLG 
Sbjct: 106 VGNFLYSANQQANEAVQDQLSALS------VTSLAVIFGAGLVTSLSPCTLSVLPLTLGY 159

Query: 345 TASF 356
             +F
Sbjct: 160 IGAF 163


>At3g18180.1 68416.m02313 hypothetical protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 470

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 81  SLQTCRVTARRKPAAYLRERTRKRAF 4
           SL+   VT RRKP   +  R+R RAF
Sbjct: 288 SLRNSAVTTRRKPRILILSRSRSRAF 313


>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
           similar to GI:11993492; RNA binding protein - Homo
           sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
           carboxyl-terminal hydrolases from aa pos. 712
          Length = 1067

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 105 GALCTLNSVLTFVMIMYVY*VVQFLFSIRILTTQPVPDQLSRL 233
           GA C  NS+L  + +   +    F   + +L   PV DQ++RL
Sbjct: 112 GATCYANSILQCLYMNTAFREGVFSVEVHVLKQNPVLDQIARL 154


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 32  RYAAGLRRAVTRHVWRDHRRYACVWCSVYT 121
           RY A LR+ + +     H +Y C +C  Y+
Sbjct: 17  RYGASLRKQIKKMEVSQHNKYFCEFCGKYS 46


>At5g15300.1 68418.m01792 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 548

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 481 DMDLFQMNGKHYACLLKQIWVKGVLEQAMSYIMFFK 588
           DM   + N KHY C++  +   G LE+A  ++   K
Sbjct: 408 DMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMK 443


>At4g34412.1 68417.m04888 expressed protein
          Length = 143

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 216 PELVALSKSLLKTETGQLSTRTLSSQKLAQNSVYTEHQTHA*RR 85
           P L A  K+L+      LSTRTL S+ L  N   ++H T + +R
Sbjct: 52  PLLAAAQKALISKSRDSLSTRTLHSE-LVYNYSGSKHITESLKR 94


>At3g57190.1 68416.m06367 peptide chain release factor, putative
           similar to SP|P07012 Peptide chain release factor 2
           (RF-2) {Escherichia coli}; contains Pfam profile
           PF03462: PCRF domain
          Length = 406

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 382 LPAGLP-PEPRLWTREDVSVFLKWCER 459
           + +G P  + ++WT + VS+++KW ER
Sbjct: 175 IKSGSPGAKSQIWTEQVVSMYIKWAER 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,679,938
Number of Sequences: 28952
Number of extensions: 292744
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)