Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0695
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1ZB42 Cluster: Mediator of RNA polymerase II transcrip...    90   5e-17
UniRef50_Q17PS7 Cluster: Mediator complex, subunit, putative; n=...    85   1e-15
UniRef50_Q7Q9H8 Cluster: ENSANGP00000015908; n=1; Anopheles gamb...    58   3e-07
UniRef50_Q4SGN9 Cluster: Chromosome 3 SCAF14593, whole genome sh...    54   4e-06
UniRef50_Q4V7L5 Cluster: Mediator of RNA polymerase II transcrip...    51   2e-05
UniRef50_Q9NWA0 Cluster: Mediator of RNA polymerase II transcrip...    50   4e-05
UniRef50_UPI000054556F Cluster: PREDICTED: similar to LOC152217 ...    35   1.6  
UniRef50_UPI000023F2AA Cluster: hypothetical protein FG06056.1; ...    34   3.8  
UniRef50_A1DLN7 Cluster: GTPase activating protein (Tsc2), putat...    34   3.8  
UniRef50_UPI0000028BA0 Cluster: PREDICTED: similar to LOC152217 ...    33   6.6  
UniRef50_A6DFN1 Cluster: Deoxyribodipyrimidine photolyase; n=3; ...    33   6.6  
UniRef50_Q7XP29 Cluster: OSJNBa0027H09.10 protein; n=2; Oryza sa...    33   8.7  

>UniRef50_A1ZB42 Cluster: Mediator of RNA polymerase II
           transcription subunit 9; n=5; Sophophora|Rep: Mediator
           of RNA polymerase II transcription subunit 9 -
           Drosophila melanogaster (Fruit fly)
          Length = 144

 Score = 89.8 bits (213), Expect = 5e-17
 Identities = 37/66 (56%), Positives = 56/66 (84%)
 Frame = +1

Query: 265 DNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKREL 444
           +NA K+RES +C+H++ ELQKR E A+ QIR+LPGI+FNK +Q ++ ELLR QL+LK++L
Sbjct: 76  ENAVKLRESQDCNHKIFELQKRFESAREQIRQLPGIDFNKEEQQQRLELLRNQLKLKQQL 135

Query: 445 LQKYRN 462
           ++KY++
Sbjct: 136 IRKYKD 141



 Score = 37.5 bits (83), Expect = 0.31
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = +2

Query: 188 LTVEDVDVDFLPIVYDIIRSVEK 256
           LTV+ +D++ LPI+YDI+R VEK
Sbjct: 50  LTVDQLDIEILPIIYDIVRCVEK 72


>UniRef50_Q17PS7 Cluster: Mediator complex, subunit, putative; n=4;
           Endopterygota|Rep: Mediator complex, subunit, putative -
           Aedes aegypti (Yellowfever mosquito)
          Length = 122

 Score = 85.4 bits (202), Expect = 1e-15
 Identities = 37/67 (55%), Positives = 56/67 (83%)
 Frame = +1

Query: 265 DNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKREL 444
           DNA+K +ES +CS +VLELQKRL+ A+  IR+LPGI+++K +QL++ E LR QL LK++L
Sbjct: 54  DNAAKQKESQDCSQKVLELQKRLDSARITIRQLPGIDYSKEEQLRRLESLRKQLALKQQL 113

Query: 445 LQKYRNM 465
           ++KY+N+
Sbjct: 114 IKKYKNV 120


>UniRef50_Q7Q9H8 Cluster: ENSANGP00000015908; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000015908 - Anopheles gambiae
           str. PEST
          Length = 145

 Score = 57.6 bits (133), Expect = 3e-07
 Identities = 24/60 (40%), Positives = 44/60 (73%), Gaps = 5/60 (8%)
 Frame = +2

Query: 509 LLKYLANNERIVQKIAESYPVRRAAQLAVSVFYRGK-----EKLSDVDPQKVNKFIEFLK 673
           +L+YLANNE+++Q++A+SYP+RRAAQ+ +S +YR +     +KL  + P+++ + +   K
Sbjct: 68  ILRYLANNEQLIQRLADSYPLRRAAQMVLSAYYRSRSIAEQQKLIGMSPERLQQALRSFK 127



 Score = 35.9 bits (79), Expect = 0.93
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +2

Query: 176 NYSPLTVEDVDVDFLPIVYDIIRSVEK--IFTTTRRK 280
           N     ++ V+++ LP+VYDIIRSVEK  I  T ++K
Sbjct: 12  NIPETKIQPVEIEILPVVYDIIRSVEKDPIDNTAKQK 48


>UniRef50_Q4SGN9 Cluster: Chromosome 3 SCAF14593, whole genome
           shotgun sequence; n=4; Clupeocephala|Rep: Chromosome 3
           SCAF14593, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 97

 Score = 53.6 bits (123), Expect = 4e-06
 Identities = 23/65 (35%), Positives = 42/65 (64%)
 Frame = +1

Query: 283 RESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRN 462
           ++S +    + +L+ +++ A+ QI  +PGIE +   Q +Q   LR Q+R K +LLQKY++
Sbjct: 30  KDSQDVHQELAKLKVKIQEAREQISNMPGIESSPLAQQQQLATLREQVRTKNQLLQKYKS 89

Query: 463 MCSFE 477
           +C F+
Sbjct: 90  LCMFD 94


>UniRef50_Q4V7L5 Cluster: Mediator of RNA polymerase II
           transcription subunit 9; n=2; Xenopus|Rep: Mediator of
           RNA polymerase II transcription subunit 9 - Xenopus
           laevis (African clawed frog)
          Length = 115

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 20/65 (30%), Positives = 40/65 (61%)
 Frame = +1

Query: 283 RESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRN 462
           ++S +    + EL+ + +  +  +  +PGI+ +  +Q +  + LR Q++ K ELLQKY++
Sbjct: 47  KDSQDVYQELNELKSKFQAMRKLVGNMPGIDMSPEEQQRHLQSLREQVQTKSELLQKYKS 106

Query: 463 MCSFE 477
           +C FE
Sbjct: 107 LCMFE 111


>UniRef50_Q9NWA0 Cluster: Mediator of RNA polymerase II
           transcription subunit 9; n=13; Amniota|Rep: Mediator of
           RNA polymerase II transcription subunit 9 - Homo sapiens
           (Human)
          Length = 146

 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 23/65 (35%), Positives = 38/65 (58%)
 Frame = +1

Query: 283 RESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRN 462
           ++S E    +  L+ + +  +  I  +PGI  +   Q +Q + LR Q+R K ELLQKY++
Sbjct: 78  KDSPEVHQDLNALKSKFQEMRKLISTMPGIHLSPEQQQQQLQSLREQVRTKNELLQKYKS 137

Query: 463 MCSFE 477
           +C FE
Sbjct: 138 LCMFE 142


>UniRef50_UPI000054556F Cluster: PREDICTED: similar to LOC152217
           protein; n=3; Euteleostomi|Rep: PREDICTED: similar to
           LOC152217 protein - Danio rerio
          Length = 104

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = +2

Query: 521 LANNERIVQKIAESYPVRRAAQL 589
           L NN ++V+K+AES P+RRAAQ+
Sbjct: 10  LINNAQVVEKLAESRPIRRAAQI 32


>UniRef50_UPI000023F2AA Cluster: hypothetical protein FG06056.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG06056.1 - Gibberella zeae PH-1
          Length = 150

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 16/48 (33%), Positives = 31/48 (64%)
 Frame = +1

Query: 319 LQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRN 462
           L+ +L+ A+AQ+R LP ++ +  +Q  +   L T++  +R LLQ+ R+
Sbjct: 84  LKHKLQRARAQVRELPDMDRSIAEQNDEIRELETRIEKQRVLLQRLRD 131


>UniRef50_A1DLN7 Cluster: GTPase activating protein (Tsc2),
           putative; n=6; Trichocomaceae|Rep: GTPase activating
           protein (Tsc2), putative - Neosartorya fischeri (strain
           ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
           fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
          Length = 1588

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -2

Query: 281 IFDALS*KSSPRFVLYRIQSVKSLHLHPQQSGDCSSSVLNDL--CCFPLYK 135
           +F+A+S  S P  +  R+QS+ SL  H ++    SSS+L  L  C  PLY+
Sbjct: 162 VFEAISCSSEPDVIPARVQSLISLSDHGRKLDFTSSSILPILSSCAVPLYE 212


>UniRef50_UPI0000028BA0 Cluster: PREDICTED: similar to LOC152217
           protein; n=1; Mus musculus|Rep: PREDICTED: similar to
           LOC152217 protein - Mus musculus
          Length = 95

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 14/27 (51%), Positives = 22/27 (81%)
 Frame = +2

Query: 509 LLKYLANNERIVQKIAESYPVRRAAQL 589
           LL  L +N ++V++++ES P+RRAAQL
Sbjct: 6   LLAALLHNPQLVERLSESRPIRRAAQL 32


>UniRef50_A6DFN1 Cluster: Deoxyribodipyrimidine photolyase; n=3;
           Bacteria|Rep: Deoxyribodipyrimidine photolyase -
           Lentisphaera araneosa HTCC2155
          Length = 481

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = +1

Query: 244 KRGEDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQ 423
           +RG+++H   SK  ES +   R+        ++  Q+ +L        D  + +  L T+
Sbjct: 207 ERGKNYHRFISKPSESRKSCGRLSPYLAWGNVSSRQVYQLVKASPKYKDNKRAYSGLLTR 266

Query: 424 LRLKRELLQKYRNMCSFE 477
           L+ +   +QK+   CS+E
Sbjct: 267 LKWRSHFIQKFEVECSYE 284


>UniRef50_Q7XP29 Cluster: OSJNBa0027H09.10 protein; n=2; Oryza
           sativa (japonica cultivar-group)|Rep: OSJNBa0027H09.10
           protein - Oryza sativa subsp. japonica (Rice)
          Length = 1570

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +2

Query: 119 KIVLKICTMENNTDHSEQTNYSPLTVEDVDVDFLPIVYDIIRSVEKIFTTT 271
           KI  K  ++E+ ++HS++   SP + +  D  +LPI+  +   +  +FTTT
Sbjct: 59  KIYSKSISIESASNHSDEIASSPTSSDRDDGAYLPILMKLPDDLAAVFTTT 109


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 605,561,548
Number of Sequences: 1657284
Number of extensions: 11107019
Number of successful extensions: 29105
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 28246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29098
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)