BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0695 (690 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 29 0.84 SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 27 1.9 SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 5.9 SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 7.8 SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 25 7.8 SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 25 7.8 >SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 749 Score = 28.7 bits (61), Expect = 0.84 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +2 Query: 440 NSYRSIGICAHLRHHPSEDASTCLLKYLANNERIVQKIAESYPV 571 +S R + C L SED S CL K N+ ++ K + YPV Sbjct: 244 SSPRFVNRCIILYFSSSEDKSDCLAKKNYVNKCLMAKALKDYPV 287 >SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharomyces pombe|chr 2|||Manual Length = 376 Score = 27.5 bits (58), Expect = 1.9 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +1 Query: 382 KHDQLKQFELLRTQLRLKRELLQKYRNM 465 KH++ Q ELLRT R E L+KY+++ Sbjct: 292 KHEE-SQVELLRTHNRQMTETLEKYKSL 318 >SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pombe|chr 3|||Manual Length = 424 Score = 25.8 bits (54), Expect = 5.9 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +2 Query: 602 FYRGKEKLSDVDPQKVNKFIEFLKR 676 F+R K KLS V+P + + F K+ Sbjct: 203 FFREKVKLSTVEPSAIKNLVLFAKK 227 >SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1076 Score = 25.4 bits (53), Expect = 7.8 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Frame = +2 Query: 125 VLKIC---TMENNTDHSEQTNYSPLTVEDVDVDFLPIVYDIIRSVEKIFTTTRR 277 ++++C +N DH Q NYSP + D D YD + + F++ R+ Sbjct: 95 IMEVCFYSVNRSNWDHIRQENYSPDIPDGYDTDTQG--YDSYKYAAEPFSSLRK 146 >SPAC23H4.08 |||RNA polymerase II associated protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 277 Score = 25.4 bits (53), Expect = 7.8 Identities = 9/32 (28%), Positives = 17/32 (53%) Frame = +2 Query: 470 HLRHHPSEDASTCLLKYLANNERIVQKIAESY 565 H +HP + + +YL+N + +Q+ E Y Sbjct: 149 HTTYHPHPQLDSMIQEYLSNGDLPLQQSTEDY 180 >SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr 2|||Manual Length = 962 Score = 25.4 bits (53), Expect = 7.8 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = -2 Query: 509 GT*RHLHLDDVSNEHIFRYFCKSSRFN 429 G+ +HL+D+ N H RY C + N Sbjct: 785 GSSERIHLEDIQNSH--RYLCSLKKNN 809 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,668,037 Number of Sequences: 5004 Number of extensions: 52271 Number of successful extensions: 147 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 147 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 319939482 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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