Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0695
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    29   0.84 
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    27   1.9  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    26   5.9  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    25   7.8  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    25   7.8  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   7.8  

>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 440 NSYRSIGICAHLRHHPSEDASTCLLKYLANNERIVQKIAESYPV 571
           +S R +  C  L    SED S CL K    N+ ++ K  + YPV
Sbjct: 244 SSPRFVNRCIILYFSSSEDKSDCLAKKNYVNKCLMAKALKDYPV 287


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 382 KHDQLKQFELLRTQLRLKRELLQKYRNM 465
           KH++  Q ELLRT  R   E L+KY+++
Sbjct: 292 KHEE-SQVELLRTHNRQMTETLEKYKSL 318


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 602 FYRGKEKLSDVDPQKVNKFIEFLKR 676
           F+R K KLS V+P  +   + F K+
Sbjct: 203 FFREKVKLSTVEPSAIKNLVLFAKK 227


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 125 VLKIC---TMENNTDHSEQTNYSPLTVEDVDVDFLPIVYDIIRSVEKIFTTTRR 277
           ++++C      +N DH  Q NYSP   +  D D     YD  +   + F++ R+
Sbjct: 95  IMEVCFYSVNRSNWDHIRQENYSPDIPDGYDTDTQG--YDSYKYAAEPFSSLRK 146


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 470 HLRHHPSEDASTCLLKYLANNERIVQKIAESY 565
           H  +HP     + + +YL+N +  +Q+  E Y
Sbjct: 149 HTTYHPHPQLDSMIQEYLSNGDLPLQQSTEDY 180


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 509 GT*RHLHLDDVSNEHIFRYFCKSSRFN 429
           G+   +HL+D+ N H  RY C   + N
Sbjct: 785 GSSERIHLEDIQNSH--RYLCSLKKNN 809


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,037
Number of Sequences: 5004
Number of extensions: 52271
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)