Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0695
(690 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 31 0.88
SB_35755| Best HMM Match : RVT_1 (HMM E-Value=1.90001e-40) 31 1.2
SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36) 29 2.7
SB_38661| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_40510| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 6.2
SB_16154| Best HMM Match : LRR_2 (HMM E-Value=1.1) 28 6.2
SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66) 28 8.2
>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3464
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +1
Query: 202 CRCRLFTDCIRYNTKRGEDFHDNASKIRESHECSHRVLELQKRLEIAKAQIRRL 363
CR R + IRY T+R + K + +++E Q+RL+ +++++RL
Sbjct: 2367 CRTRKYHIMIRYLTQREQKIIGRRQKAEDLLASQRKLIEWQQRLDAEESEVQRL 2420
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 31.5 bits (68), Expect = 0.67
Identities = 21/59 (35%), Positives = 38/59 (64%)
Frame = +1
Query: 286 ESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRN 462
+ +E R+LELQ+ + + Q+R L +E +H QLK+ +L+ Q + +++LLQ+ RN
Sbjct: 220 QKNEHQQRLLELQR---LQEEQLR-LTELEIQEH-QLKKELILKKQEQERQKLLQQLRN 273
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +1
Query: 265 DNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKREL 444
+N+ + +H VL LQK L AQI + F+K ++L E+ + + K E
Sbjct: 2358 ENSESKSRFTQINHEVLSLQKDLANKTAQITKFQRDTFDKDNRLTTLEIEKIDIEKKLES 2417
Query: 445 LQ 450
L+
Sbjct: 2418 LK 2419
>SB_35755| Best HMM Match : RVT_1 (HMM E-Value=1.90001e-40)
Length = 414
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 437 VNSYRSIGICAHLRHHPSEDASTCLLKYLANNERIVQKIAE 559
VN Y S C ++RHH +++ + + L+ NE + +++A+
Sbjct: 356 VNRYCSSNACINVRHHANKENNFVRIMGLSRNENVNRRLAK 396
>SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 355 RRLPGIEFNKHDQL--KQFELLRTQLRLKRELLQKYRNMCSFETSSK*RCLY 504
+RLPG+E HDQL F RT+L++ R+ Y +T ++ R LY
Sbjct: 201 KRLPGLEKLSHDQLFFLSFAQARTRLKVDRDYHTGYDQTTRVDTKTR-RELY 251
>SB_6733| Best HMM Match : 7tm_1 (HMM E-Value=9.6e-36)
Length = 398
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 568 CTKSSSVSCLSILQREGKAL 627
C +S SV+CLS LQR G+ L
Sbjct: 276 CARSISVACLSALQRHGECL 295
>SB_38661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 470 HLRHHPSEDAS-TCLLKYLANNERIVQKIAESYPVRRAAQLAVSVFYRGKEKLSDVDPQ 643
H P++ +S T L K + E +V K A +P+R A Q A YRG+ + ++ Q
Sbjct: 33 HTGSGPAQPSSITRLPKDDDSMEELVDKPAPMFPMRSATQRASKKDYRGRGRSHGINAQ 91
>SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 113 CLLCNRFYYTYVVY*FINLLDYGY*THKP 27
C + + TY +Y F+ ++DYG +KP
Sbjct: 1089 CTITQAIHDTYDIYDFLKIVDYGRWAYKP 1117
>SB_40510| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 734
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 161 HSEQTNYSPLTVEDVDVDFLPIVYDIIRSVEK 256
H + TN+S +V D +D LP++ DI S +K
Sbjct: 621 HFQVTNWSDHSVPDKPLDLLPLLNDIQTSQQK 652
>SB_16154| Best HMM Match : LRR_2 (HMM E-Value=1.1)
Length = 103
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 74 KQRTYNKICYIISK*KIVLKICTMENNTDHSEQTNYSP 187
K +T N+ YI+++ + LK C M NNT Q Y P
Sbjct: 38 KTKTINENTYILNEIQ-ELKECMMANNTRKKHQGRYPP 74
>SB_40279| Best HMM Match : zf-MYM (HMM E-Value=0.66)
Length = 364
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 95 ICYIISK*KIVLKICTMENNTDHSEQ---TNYSPLTVEDVDVDFLPIVYDI--IRSVE 253
+C + K V K+ + EN+ D +EQ + YS +T++ ++ LP+ D+ IR+VE
Sbjct: 183 VCQRCKRDKNVPKMWSAENHMDPAEQPAYSAYSDVTIDVERIENLPLDGDLPDIRTVE 240
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,144,735
Number of Sequences: 59808
Number of extensions: 373410
Number of successful extensions: 965
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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