Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0695
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   0.90 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   6.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   6.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.3  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 110 SK*KIVLKICTMENNTDHSEQTNYSPLTVEDVDVDF 217
           SK  I+  IC +++  D+ E T YS  +V  +   F
Sbjct: 274 SKVHIIDSICGIDSKPDYRELTEYSVTSVRLISSGF 309


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 240 YEAWRRFSRQRVENTRVPRVQS*SS*ITKEARNS*SSD 353
           Y A RR  R+R   +R+  VQS       +A  S SS+
Sbjct: 220 YLATRRRLRERARQSRINAVQSTRHREADDAEESVSSE 257


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 240 YEAWRRFSRQRVENTRVPRVQS*SS*ITKEARNS*SSD 353
           Y A RR  R+R   +R+  VQS       +A  S SS+
Sbjct: 220 YLATRRRLRERARQSRINAVQSTRHREADDAEESVSSE 257


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 208 IYILNSQGTVVRLF*MICVV 149
           +Y LN     +R+F +IC++
Sbjct: 235 VYFLNMASVFMRIFNLICMM 254


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 240 YEAWRRFSRQRVENTRVPRVQS*SS*ITKEARNS*SSD 353
           Y A RR  R+R   +R+  VQS       +A  S SS+
Sbjct: 220 YLATRRRLRERARQSRINAVQSTRHREADDAEESVSSE 257


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 492 KMPLRACLNT*PIMNELYRRLQSPTLYEEQLS 587
           + P RAC  T  + ++      SPT+Y + L+
Sbjct: 583 RRPQRACSTTGGVPSKSPTLTHSPTMYGDALN 614


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,200
Number of Sequences: 438
Number of extensions: 3654
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)