Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0695
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66840.1 68414.m07597 expressed protein contains Pfam profile...    30   1.3  
At5g39970.1 68418.m04847 expressed protein low similarity to up-...    28   5.1  
At5g62630.1 68418.m07861 expressed protein                             28   6.7  
At3g07780.1 68416.m00949 expressed protein                             28   6.7  
At2g38160.1 68415.m04684 expressed protein                             28   6.7  

>At1g66840.1 68414.m07597 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           expression supported by MPSS
          Length = 607

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +1

Query: 283 RESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQKYRN 462
           +E  E S  + + +KR+     +I R    E    + L   E+L TQL+L +E+ +K + 
Sbjct: 193 KERKEVSESLHKRKKRIREMIREIERSKNFENELAETLLDIEMLETQLKLVKEMERKVQR 252

Query: 463 MCSFETS 483
             S   S
Sbjct: 253 NESMSRS 259


>At5g39970.1 68418.m04847 expressed protein low similarity to
           up-regulated by thyroid hormone in tadpoles; expressed
           specifically in the tail and only at metamorphosis;
           membrane bound or extracellular protein; C-terminal
           basic region [Xenopus laevis] GI:1234787
          Length = 690

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 136 LYNGKQHRSFRTDELQSPDC*G-CRCRLFTDC 228
           L NG+   SF  D ++ P+C G C C    DC
Sbjct: 281 LKNGRFFASFNCDRVKWPECSGKCACNSDIDC 312


>At5g62630.1 68418.m07861 expressed protein
          Length = 696

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 142 NGKQHRSFRTDELQSPDC*G-CRCRLFTDC 228
           NG+   SF  D+++SP C G C C    +C
Sbjct: 284 NGRFFASFNCDKVKSPGCSGRCACNSDVNC 313


>At3g07780.1 68416.m00949 expressed protein
          Length = 566

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 283 RESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQLRLKRELLQK 453
           RE  E + +V ELQ   +  K QI  +  I   K  + + F+L   + +++ E L++
Sbjct: 425 REVEEKAKQVAELQMERQKKKQQIEEVERIVRLKQAEAEMFQLKANEAKVEAERLER 481


>At2g38160.1 68415.m04684 expressed protein
          Length = 299

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 265 DNASKIRESHECSHRVLELQKRLEIAKAQIRRLPGIEFNKHDQLKQFELLRTQ-LRLKRE 441
           +N   +R+  E     LE+++R ++        PG    +    K  ELL+T  ++L+R 
Sbjct: 2   ENVVVVRDGDEELSLFLEMRRREKLQGVSSLSQPGANSVEKTSTKSLELLKTSCVKLRRS 61

Query: 442 LLQKY 456
            ++K+
Sbjct: 62  SVEKF 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,298,130
Number of Sequences: 28952
Number of extensions: 251293
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)